4 genomes BUD1965 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3168 HVO_B0136 Hbo1890 - Hut1611 - - -

Pairwise sequence scores
Consensus score	2020	rrnAC3168	HVO_B0136	Hbo1890	Hut1611
1443	rrnAC3168	2026	1343	750	743
1394	HVO_B0136	1343	2129	668	671
1202	Hbo1890	750	668	1931	1158
1222	Hut1611	743	671	1158	1927

276 symbols
consensus       MQPVTSADGTEIAYERHGDGQPLILLHGGMAPRAHWRPLIPHL-DDYTLVVPDRRGRGTC
#oth            .11221111222321.2.1131.111..11121331111212122222221.2.1.1.21
rrnAC3168       :::TQ:::AI:VEF::Y::::::L:::::::::EY:::V:SAS:EG:GA:::Q:P:F:::
HVO_B0136       :::IRFEP:A:PSD::F::DT::LCC::::::P:F:D:VV::::G::EV:::E:P:F:::
Hbo1890         :KT:::::::S:G:::::E:PS:::::::SGT:Q::DA:R:::T::F::SI:::::::ES
Hut1611         ::T:::::::R:::D:::E:S:::::::TS:D:HSF:::::R:A:EH::I::::::::DS

consensus       LDGAAYT-A--VLDREVEDLRALVDAVDG----DPILFGHSFGALTALAAAADASVEALV
#oth            2.2322221221.2...22111..2111111112131....1.1.1111..323222112
rrnAC3168       ::SP:E:S:DE::::::RYVQ::::::::::::::::::::Y:::::IE:::GT::::VI
HVO_B0136       ::D:ET:P:EA::E::::CV:E:::GIRAATGR::V:::::Y::::::E::T::R:A:VA
Hbo1890         G::DK:D:-::-:S:::A::::::E::::::::PTTV::::::G:V:::::SEI:LDR::
Hut1611         E::S::S:-::-::::::::::::G::::::::T:SV::::::G:VT::::P:LAI:R::

consensus       AYEPAVLPGDHRADADLADRMASRVNAGQRRDAVRRFIEQALHPDGIPDLDAWL-ELPWW
#oth            1....1.122213211.12.1121231.2.21121112.111111.12.22111211.1.
rrnAC3168       ::::::::AEY::::::::::::L:QD:K:EE::K:Y:::V::::::E::::::A:W:V:
HVO_B0136       ::::::::EAN:TE:N:SE:::AL:E:::::E::K:YV::V::::::D::::::D:W:V:
Hbo1890         L::::L:V::::G:-:::S::E::L:::::Q::M:L:L:E:---G::::VEQ--:-::::
Hut1611         L::::::V:::QNT-:::::LEE:FD::D:::VL:L:::E:---G:V::AT:--:-::::

consensus       PD-ACVALAEEVVRENRAVEQYRLPARLDIDVPALLLTGEDGPDFLRDAARNVHDALPDS
#oth            .1212221..11..1112..2.1..23111.2.111.2.12..22..212231211.121
rrnAC3168       :::-::::::::::M::S:::::::DC::V:::T:V:S:T:::::::QS::D::::::Q:
HVO_B0136       :::-::::::::::M::::::::::::::V:A::VV:A:T:::::::ES:::::::::T:
Hbo1890         :EE:GLS:::T:::::YE::A:E:::EP:::::T::::::Y::AH::::VFELDER:S::
Hut1611         :ED:PFDR::TI:::S::::D::::VDPS::G::::::::R::EP::::IVT:E:R:::A

consensus       RFVEFDGVGHGGPASAPERVAAAVDAF-LGD-----
#oth            121..1111.3113221111112.22.122211111
rrnAC3168       ::::::::S:S:::E:::LI::E:::::RKT:::::
HVO_B0136       ::::::AL:::::GDD:::::::::::::R:RAGLP
Hbo1890         :V::::::::VATQ:E::L::D::RR:AY:::::::
Hut1611         QLT::E::::M::E::AH::GDT:TS::::-:::::