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4 genomes BUD1981 5 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC1366

rrnAC2117

HVO_1994

-

Hmu0317

Hut2069

- - -

Pairwise sequence scores
Consensus score1841 rrnAC1366 rrnAC2117 Hmu0317 HVO_1994 Hut2069
543rrnAC1366 1408 386 382 409 413
1304rrnAC2117 386 1896 1340 911 894
1308Hmu0317 382 1340 1882 897 936
1341HVO_1994 409 911 897 1784 1285
1312Hut2069 413 894 936 1285 1864

267 symbols
consensus       MAQSTADRPE------GLARRANPAFAG----GAVAVPLAALAYALASGSIRALTYVHVM
#oth            112233223311211122.4111111.21111131122221112.22223223112...1
rrnAC1366       ----MP:::D::::::TV:D:GT:TV::VVGA:LA:CVAVGFG::SLT:T:AT:RT:::W
rrnAC2117       ::::::::V:RKRGIG:::KQ::::::V:::::::::::I:F:G:::::N::::::::::
Hmu0317         :::::::T::::WGIG:::TQ::T:::A:::::::V:::::::A::::NDV:::::::::
HVO_1994        ----------::::::-M:::::::::::::::I:::SVV:::::VTV::LQQH:F::::
Hut2069         ::TTVRGTIA:::::::M:Q:::::::V::::AV::I:::::G:::TVA::QGH::::::

consensus       AGVLWTGIDLFMGAVLGPVIGGLDDEQRAAFFGRLTPKTTFLLPSLATVTIAGGIALALR
#oth            1.21..121212.2111.121222223211213111.113111.21.2...22.121.12
rrnAC1366       V:TA::ALV:MY:FIVA:LLRER:TDGAY:IV:::V:A:IV:::T::V:::TA:VTM::T
rrnAC2117       :::::::::::::L:::::L::QEP:A::D::ASF:::M:::M:T::::::S:::L::::
Hmu0317         :::::::::M:::::::::V:S::PK:::D::::F:::M:::M:A::V::::::::::::
HVO_1994        ::L::::T::::::I::::::::S:::S::V:E::::::S:F:::M:L:::::::T::Q:
Hut2069         :::::::::V:I::::::::::::::ES::V:Q::::::A::::::::::::S::::::E

consensus       LGKFANADPWLALFTAANLIPICLLLGYRLDALRDPRWQAVLGVATVGSGAWLATTLPAF
#oth            1242242231113211223212411223222123132323322112111211221.1332
rrnAC1366       Y-----------------------------------------------EIV:PM:::IRT
rrnAC2117       ::::P:::::::IL:::T:::VI::I::QF:::T::KTLGI::::V:::::Y:V::::::
Hmu0317         :TT::Y::Q:::V:::V:TV::V:::A:QF:::G:R:AL::::::V:::::Y::::::GT
HVO_1994        ::V:PH:E:::::::::::::::::::R::N:W::::::::FA::::::L::V:::IGD:
Hut2069         ::YL:DGEG:::::::::AV::L::::W::::W::W:::LPF:::::::L::V:L::D:L

consensus       AL------TSPAIAVALAIVTILSVQGFGFLLPGEIRIYREMTSENPDPELISAIGKRNA
#oth            4211111123223211122112.111111231.11211.1133.12..3221321.211.
rrnAC1366       V:::::::---GV:::I:GIAL:G:------::TDVL::::LR:A:::::RVVSL:A:T:
rrnAC2117       :M::::::::WWMVAT:G:::L:::::::VI::::V::::QVV:::::VD:V:E::M:::
Hmu0317         S:VAMVTT:::WLLA::G:::V:GL::::VV:::::::::QIA::E::T:::GE::M:::
HVO_1994        RM:::::::T:::V:::VV::::::::::::M:::::M:F:::::D:::GV::::::Q::
Hut2069         PA::::::IE:::::::::::::::::::::M:::L::::::::A:::SGV:A::::Q::

consensus       MLGGVQGALQLAIIFDMVGLRYGGF--
#oth            3.111..22.142222.12..233322
rrnAC1366       T:LT::::::VMML:L:--::VAAMAT
rrnAC2117       R:::L::LM::::V:V:::::WWTP::
Hmu0317         K::::::V:::S:V:V::::::LS-::
HVO_1994        :::::::VF::VL:A:::Y::::::::
Hut2069         ::::::::F::LL:L:::Y::::::PF