4 genomes BUD1988 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2658 - Hbo3993 Hmu2960 Hut2226 - - -

Pairwise sequence scores
Consensus score	1047	Hut2226	Hbo3993	Hmu2960	rrnAC2658
726	Hut2226	1051	620	608	603
813	Hbo3993	620	1058	673	706
834	Hmu2960	608	673	1107	657
786	rrnAC2658	603	706	657	1041

153 symbols
consensus       MAPSHVLVPLDGSPLADEALAHALDTFDCPITVLNVVTPIDSAMSEGGILDRDEDRRAAA
#oth            .311...........122..31.1121..21.....11.1123...1.1233113.321.
Hut2226         :::T::::::::::::GQ::R:::ESY::G::::::L:::G:T::::::Q::T:H:V:E:
Hbo3993         :P:::::::::::::::::::::I::::::V::::::::L::S::::::VGN::S::E::
Hmu2960         :R:::::::::::::SQA::S::::V:::::::::::::::A::::S:V:-T::V:GG::
rrnAC2658       :TLT::::::::::::::::TY::E::::R:::::::A:L:TG:::::V:EP:A::Q:::

consensus       RERAADLIDAAREQAAEADQRVETAVEEGD----------PAETILAYVDENDVDQIVMG
#oth            311.332123.121122311311111.3.11111111111...1.131212311.111..
Hut2226         ED::ETMVAK::::VGAH:::::AVI:V:::::::::::::::V:VSSI::YG::HV:::
Hbo3993         H:::NE::ET::RR:::SGRNLD::::M:E::::::::::::::::E:::DH:::H:I::
Hmu2960         ::H:::V:::::::::GT::P:::V:::::PVETVVEEGD:::::V::AEA::A::::::
rrnAC2658       D:::TK:V:R:SQ::S::G:Q::::::T::::::::::::::::::D::E:V::::V:::

consensus       GHGGDSDELASRLLGTVATAVVSEAPVTVTVVR
#oth            ....3222112........1..2..........
Hut2226         :::::::G:V::::::::::::T::::::::::
Hbo3993         ::::SQS::V:::::::::T:::::::::::::
Hmu2960         ::::G::-::K:::::::::::R::::::::::
rrnAC2658       ::::TRN:I:R::::::::::::::::::::::