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4 genomes BUD1989 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1029

 -

Hbo2947

Hmu0584

Hut1789

 - - -

Pairwise sequence scores
Consensus score1718 Hut1789 Hbo2947 rrnAC1029 Hmu0584
1111Hut1789 1714 874 827 943
1210Hbo2947 874 1728 990 1046
1294rrnAC1029 827 990 1886 1275
1435Hmu0584 943 1046 1275 1736 

256 symbols
consensus       ---------------------VTEPVLRGSDLRVTRGGNDILDGVSLAVADDATVLVQGP
#oth            1111111111111111111112222..112213.2.2.33111.1113.212222..1.1
Hut1789         ::::::::::::::::::::::S:T:::AT::::R:::::VI:::TV::D:GE::::::Q
Hbo2947         :::::::::::::::::::::-MA:::::ENVT:E:::SV::::I::D::::TSL::R::
rrnAC1029       MSIFPVYVTVAYNTGPAERPTM:D:::V::G:C:::R:TK::N::::T:GS::AM:::::
Hmu0584         ::::::::::::::::::::::::S::V::::V:::S:EQ:::::::S::SN::::::::

consensus       SGAGKTTLFNVLGLLEAPSSGRLEVDGRDASALSERERAALRRDTIGFVFQDFQLIGDLT
#oth            ..1..1...111...1312..3.312.2.112.11.2..22..211.1.1......2..1
Hut1789         ::S::::::EIF:::SDC:::E:VI::V:VTG::R::::LF:::RL:M:Y::::::D:::
Hbo2947         :::::::::::::::ST:T::S:F:N:E:::S:P::K:::I:::::::::::::::P::S
rrnAC1029       :::::S::::::::::P::::::::A::::::::::Q::S:::T:L::::::::::::::
Hmu0584         ::::::::::::::::::E::T:H:::::::::::::::::::S::::::::::::::::

consensus       ARENAALPQEHAGSRDPAWLDTLFDRLGIAALADQYPATLSGGEKQRVAIARALANRPDI
#oth            .11..2...2.1122.23..1.1112.1.231331..2...............1..1.11
Hut1789         :::::Q:::S::R:Y:D:::::VL:G:::SPI::R::S:::::::::::::::V::K:::
Hbo2947         :WD::::::D:T::::ES::E::::A:D:TD:RE:::T::::::::::::::::::K::V
rrnAC1029       :::::S:::::::N:::D::::::E:::::G:EH::::::::::::::::::::::::E:
Hmu0584         :::::::::::::EP::E::::::::::::::GG::::::::::::::::::::::::E:

consensus       VLADEPTGQLDPATADRVLDLLFRMKASAETALVVISHDRQLAPRFDERLRLADGRLT--
#oth            1...........3.112.12...3221212.1.221...121121.21223131.11122
Hut1789         ::::::::::::E:T:::IS:::EASEL:A:T:LTV::::RITSH:ETIY::T::T::RT
Hbo2947         ::::::::::::N::E::::::::V::QTD::::L:::::G:::::A:TVL:Q:::I:::
rrnAC1029       I:::::::::::D::ES::N:::S::E:T::::::::::P:::Q::::::FIRG:T:V::
Hmu0584         ::::::::::::::::A::::::G:Q:::::::I:::::P::::H:::::Q::::::VEH

consensus       EANDDRPDSSDSSETN
#oth            2331331322121223
Hut1789         :TG:Q::I:::E:---
Hbo2947         D:D::ELE:I:Y:PRQ
rrnAC1029       SDTAST::A:P:T:::
Hmu0584         :H::EQ:PQTP::::S