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4 genomes BUD1994 4 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC1475

-

Hbo2566

Hmu2118

Hut2500

- - -

Pairwise sequence scores
Consensus score3129 Hbo2566 Hut2500 rrnAC1475 Hmu2118
1378Hbo2566 3117 1129 1038 1108
2416Hut2500 1129 3178 1929 1996
2413rrnAC1475 1038 1929 3123 2040
2467Hmu2118 1108 1996 2040 3125

420 symbols
consensus       MATAAA-LSEPQVLAHAKDRLFPDRD--EDAYAVADTQFAQERWLDGRPIEAAVRARLAP
#oth            1213.12.1..2...21.22.11232123.3.1.21...1222.22231.2332222...
Hbo2566         ---M::T:T::T:::A:::T:Y::L:TNT:H:::TE:::TKSS:-G:WE:PDDL:R::::
Hut2500         :T:K::::::::::::::Q::::EPA:A::T:::V:::::S:E::A:E:::PG::E::::
rrnAC1475       :::::SG::::::::RT:::::A::E::-:::V::::::::Q::::DT::::::Q:T:::
Hmu2118         :::S:S::T::S::::T:RE:::GD:::P:G:V:::::::::::V:R:::AEETK:A:::

consensus       FNHVRVGTGYPDLVGVGQLATDLLAVDRLGDRPPLVAIEAKGY-TDGGTADVERGIVQAH
#oth            1.111112.1...1..2313211.221121221.1211....21232221.211111..1
Hbo2566         Y:TI:LTD:E:::L:::MP:LEV:NA:ATTT--:VTV:::::HNS:PSA:::RT::N:::
Hut2500         ::::Q::S::::::::R::E:E:::IE::::D::::::::::D::E:R:::::::::::Y
rrnAC1475       ::::::::::::::::QT:S::::S::::::::::I:::::::::GN:GV:A:::V::::
Hmu2118         :::::::::::::::::P:DN:::::::Q:E:::::VV::::::-S:::V:G::AV::::

consensus       DRLNEANVAFVAAPRASISDAARTLARELNVGVLGVDSDGAVDVLERPRVVGNRTDDEA-
#oth            11.3.1.21112..332.2231111..1..1..1..213131321.21..1.21232211
Hbo2566         GH:S:V:IGY::::IQ::T:Q::A:::D::I::I::E:PHDAMLI:PA::T:VGDFSTTI
Hut2500         :::H:::A:Y::::KPA::NS:Q:::::::::::::::G::::P::V::::::::V::::
rrnAC1475       ::::::::::LT:::SG::T::::M:::::::::::::::S:S:::::::::HGSM:A::
Hmu2118         :::D:::::::S::L:::R:GE::::::::::::::TES:R:E:::::::::::::G:::

consensus       AAIRFQATAQGVAEKSFGLNHPKNYLAYPLAVAHDGDTRDLLAEHVVRAVDGARQGAAFL
#oth            3......21111112..21......1111..221213.3212221.131111112..11.
Hbo2566         D:::::::THQLT:G::PV:::::::G:A::L:A::G:P:VYS:::INS:S:G:R::IL:
Hut2500         :::::::::::::::::S:::::::::::::FY:PDP:DQV:G:Y::S:T::::::::::
rrnAC1475       S::::::S:::::DQ::::::::::I:V::::H:E::::::::S:::::::::LA:::::
Hmu2118         G::::::G::::::::::::::::::::::::::::E:ER:V:D:::G:::A::::::::

consensus       GLIDAQPRGETLTPLGREVVRFARRRHGTVDAALVAFESWQRSRKRFVDIAPRWGQLARR
#oth            1.1.321323...1..1.....11333.1211.123.221211111.212..2.1.12.1
Hbo2566         ::V:N::H:::::H::A:::::::SH::::::::DE:A::KGRSTP:T:L::::A::::S
Hut2500         ::::EA:D:T::::::::::::::H:Y:::ED:::::DA::G::::::E:::E::::T::
rrnAC1475       N:::TGQGTL:::::::::::::L:TV:DI::::RR::D::::::::I::::Q::::V::
Hmu2118         ::V:::::-P::::::::::::GLEEF::LE::V:D:::YR::::::::V::::::V:::

consensus       VVIAYPATDLIVEELQAMHDDGIDAPSLVELVAWLHAHHPTFTVELFFRGDESVRERVLT
#oth            .233.11.3.1112.232.21.133111112.32112211211..1.2112222.21..1
Hbo2566         :A:Q:EP:Q::I:A:ERL:QH::KPATIDTV:REACRINQPLA::V::--TQ:R::D:::
Hut2500         :LWS::::K:::::::T::::::PE:::::::T:::V::::::::::I::SD:A:S::::
rrnAC1475       ::SD::::::L:DG:Y:C:R::YGS:::::F::Y:::L::E::::::L::::T::Q::::
Hmu2118         ::Y:::::T:L:::::Q:::::::::::::::E:::::::::::::::::::N::::::N

consensus       EDGELRASALSDGNVYHSPTVFQLKAMLYHAGILTDRGAEPSRLDPETDNWALCDPLA--
#oth            21.112313.1.131.11111..1.1221.1.11.21.111231111213.2.2311321
Hbo2566         A::DIDE:V:T:PT::K:GIH::F:YH:R:I:L::AG:TDDKD-EVLSN::E:NQAVGL:
Hut2500         :::::K:::::::::::A:::::::::C:::::::E:::::H:::::::V:Q:VE::DHG
rrnAC1475       G:::::R:E:T::S::::::::::::IY:::::V::::::::N::::::E::::::::::
Hmu2118         :G::::DAP::::DS:::::::::::::::::L:::::::::K::::R:T::::H:V-::