4 genomes BUD2039 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3069 HVO_A0331 - Hmu0530 - hla2110 - -

Pairwise sequence scores
Consensus score	3069	HVO_A0331	rrnAC3069	Hmu0530	hla2110
2716	HVO_A0331	3268	2439	2493	2401
2695	rrnAC3069	2439	3053	2487	2430
2765	Hmu0530	2493	2487	3280	2440
2658	hla2110	2401	2430	2440	2992

420 symbols
consensus       M--------------------K---E--PNAR-ANAMSRITDYELFEVPPRWLFLRLETS
#oth            122222222222222222222122212223331323223111.............111.2
HVO_A0331       :MDESYNIEGSKAGTGVTVRE:GFF:GH::EYVS:P::K::E:::::::::::::K:::T
rrnAC3069       -::::::::::::::::::::-:::-::MT:D:DA:GN:TV::::::::::::::::::A
Hmu0530         :ATPVRESPPGTRVSRIGQSP:RLN:PK:HV::::T::E:::::::::::::::::I:::
hla2110         -::::::::::::::::::::-:::-::----:----MY::::::::::::::::K:T::

consensus       DGTVGWGEPVVEGRAHTVRAAVEELLDNYLLGEDPARIEDHWQAMYRGGFYRGGPVLMSA
#oth            ..2...........111.11.....1.1.11.11.22.1....1................
HVO_A0331       ::V:::::::::::::S::::::::M:::V::T:::A:::::::::::::::::::::::
rrnAC3069       :::::::::::::::::::::::::::S::I::N:EN:Q:::::::::::::::::::::
Hmu0530         ::L::::::::::::R:::T:::::M:::::::::S:::::::T::::::::::::::::
hla2110         ::::::::::::::S:::V:::::::::::::::::::::::::::::::::::::::::

consensus       IAGIDQALWDIKGKQFGAPVHELLGGAARDRIRVYQWIGGDRPSDVAEAAREQVDAGFTA
#oth            ...1..........111....1....31...1.........1.11.121.211.1..1..
HVO_A0331       ::::::::::::::H::::::::::::T:::M::::::::::::E:::Q:ELK:E::L::
rrnAC3069       :::::::::::::::L:::::Q::::Q::::::::::::::E:::::S::Q:::::::::
Hmu0530         ::::::::::::::H:D:::::::::K:::::::::::::::::::::Q:::::E:::::
hla2110         :::V::::::::::::::::::::::R::::::::::::::::A::GD::::K:::::::

consensus       LKMNATAEIERIDTPATVQAAVDRLREVREAVGDEVDIGVDFHGRVSKPMAKRLAAALEP
#oth            1.....2.2111.2..1121.12.122...1..1.1..........1...21..131.1.
HVO_A0331       V:::::::L:::::::S:::::N::E:::::::P:I:::::::::::::::::::K::::
rrnAC3069       ::::::P::::V:N::::E::AT::::::::::P::::::::::::T:::G::::S::::
Hmu0530         ::::::E::::V:D:::I::::::::Q:::::::::::::::::::T:::::::VEE:A:
hla2110         ::::::::MRP:::::::AD::::IAA:::S:::::::::::::::::::VR::::::::

consensus       YEPMFIEEPVLPEHNDALPAIAQHTTIPIATGERMYSRWDFKEVFENGAVDLIQPDLSHA
#oth            .1...1..........1..11111.11........1....1.21..211..1....1...
HVO_A0331       ::::::::::::::::V::E::::::::::::::::::::::Q:::::::::::::::::
rrnAC3069       ::::::::::::::::::::L:A::E::::::::::::::Y:::::D::::V::::::::
Hmu0530         :::::V:::::::::::::E::::::T::::::::F::::Y:SL::::T::V::::::::
hla2110         :D:::::::::::::::::::R:S::T:::::::::::::::::::TD::::::::V:::

consensus       GGITEVKKIASMAEAYDVAMAPHCPLGPIALASCLQVDACSPNALIQEQSLDIHYNETSD
#oth            .....11...1.......12........1.....2...1121.11.....11....112.
HVO_A0331       :::::::::::::::::::L::::::::::::::::::T::::::::::::N::::QRN:
rrnAC3069       ::::::Y:::::::::::::::::::::V:::::V:::::::::::::::I:::::::T:
Hmu0530         ::::::::::A::::::::::::::::::::::::::::TAA::F:::::::::::::::
hla2110         :::::L::::::::::::SV::::::::::::::I:::::T::V::::::::::::::::

consensus       VLDYLADPSVFDYEDGFVAIPDDPGLGIEIDEEYVREQAERNVDWHNPVWRHDDGSVAEW
#oth            .....1.121.1.2..1.31.121...121..222.1.223311........1.......
HVO_A0331       :::::E:K:A:E::::Y::V::E:::::QM::Q:I:K::::P:N::::::::E:::::::
rrnAC3069       ::::::::::::::::::TV:T::::::::::AFL:::SQQE::::::::::::::::::
Hmu0530         ::::::::A::::D::Y:E::::::::V::::::::::::LDH:::::::::::::::::
hla2110         ::::::::T::E:R::::D:::GD::::K::::H::::-RG:::::::::::::::::::