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4 genomes BUD2046 4 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC3254

-

Hbo3739

Hmu2427

-

hla0496

- -

Pairwise sequence scores
Consensus score5325 Hbo3739 hla0496 Hmu2427 rrnAC3254
3836Hbo3739 5607 2906 3192 3312
3961hla0496 2906 5740 3035 3419
3969Hmu2427 3192 3035 5184 3421
4455rrnAC3254 3312 3419 3421 5555

808 symbols
consensus       ----VTDRAS----R--------------------RSD-------DGLARRAVLAAVAGA
#oth            1111112311222212211111111111111122211122222222213..22.212.22
Hbo3739         :::::::GG:::::-::::::::::::::::::::---:::::::-E:T::RL:::::S:
hla0496         ::::::::::PGND:SDIDDDRSDIDDDRSDIDDD:::IDDDRPES:V:::T::G:L:::
Hmu2427         ::::::EY::::::-::::::::::::::::::::---::::::::L:D:::F:::T:AV
rrnAC3254       MVYGIIGFGDSDGS:CP:::::::::::::::TTH:::EGPMTDR:::S:::::QT:::T

consensus       GAAAVAGCSALESEEDAATTTVDEERARELAERFAPTLYFDSAEPWFPTDPRPYESERDG
#oth            13111....13.22311112212322121..2.1..1.1..21.2.........111311
Hbo3739         S:::::::::T:::PN:T::A:PTDE::T::::Y::V::::AN:R::::::::::::S::
hla0496         :S::L::::GS:PD-::::D:L:P:TLD:::T::::::F:::::::::::::::TV:E:D
Hmu2427         :TS:::::::::AG:::T::P:::G:::::::::::::::::::Q:::::::::::D:E:
rrnAC3254       :L:S::::::F:::S:D:AS::EG:::A:::R:::::::::R::::::::::::T::Q::

consensus       ETVVDGFDALDGYHERAAEAE-PPDPTVFYNVVQYEDSPLAVVQFWFYSAFDQFTTNFHW
#oth            11..1..1.11..2..3322221.1..1.1.113.12...1...1.2........1....
Hbo3739         :P::E::::::::S:::T:TP:V:::::::::RS::E:::T:::Y:::::::::::::::
hla0496         :::::::V:F::::::YD::GE::N::::::G::::::::::::::L::::::::A::::
Hmu2427         :::::::::::::T::FRA::T:::::::H:::T:D::::::::Y:A:::::::::::::
rrnAC3254       D::::::::FN:::::M:DG:::::::A:::::E::N:::::::::::::::::::::::

consensus       HDWEVLHVFVDTDTDDPQLYVASSHSRSVPNNEFLDPDPEAVPRILSELGSHSSALSVNE
#oth            .....1...1.1221212.2.......2.....1...21231..1.1.......1..1.1
Hbo3739         :::::V:::I::ER:SAR:H:::::::R:::::H:::M-:E::::::::::::::::L::
hla0496         :::::::::::L::G::::::::::::::::::::::N:D:I::V:::::::::T:::::
Hmu2427         :::::::::::::S:E:A:F::::::::::::::::::-RT:::::Q:::::::::::::
rrnAC3254       ::::::::::::G:G::::::::::::K::::::::::::M::::::::::::::::::D

consensus       ERDRFQRLPEGDRIADITNRAIDTVEDLANIPVAYGLPRDEGSRLPFVVPELDGAPLYEH
#oth            2122.1.1221133.....22122211.231.2.........2...11...11.2.1.1.
Hbo3739         ::ES:::VSV::IS::::::::RGLSS:E:V:A:::::::::F:::::::::::K:V:::
hla0496         NPGQ:::VG:EGLL:::::TT:::::::LG::I:::::::::M::::::::YE:E:::D:
Hmu2427         :::::::::T:GD:::::::VV:D::S::S::::::::::::::::Y:::::::::::::
rrnAC3254       V::::T:::::::F:::::S:VE:I::::E::::::::::::::::YL:::YE:::::::

consensus       ERLPSVSREDLVPEALTIRSFDSLTSPPTDLPERETGLAFRHEDRNDP----EGDEDIAY
#oth            21..1.2212.1222..1..1.2.22..1...3....1113121.2.2111132.2223.
Hbo3739         ::::A:T:DT::::::::::::D:::::::::G::::::LDF:G::::::::::::T--:
hla0496         PD:::::V:S::DG::::::L:A:G:::::::F::::I::::A::E:ELADRTA::V:G:
Hmu2427         D:::::EP:::::DE::V::::::SA::::::::::::V:EF:G::::::::GT:A:V::
rrnAC3254       :::::::::::IS:P::V:::::::E::S:::T:::::V:Q:T::G:-::::-::P::E:

consensus       DLVPSAELEHITAFTGPQLSFEFAVPEFAEDAVAGHITTTGAPWNQPRYENPAADISEPN
#oth            1.122212.1122...1...1..2.1121...111.1...12..2.1..11..1.11211
Hbo3739         E:::AT:V::L:::::T::::::N:TQ:::::I:::L:::D:::T:E:::D:::::T::A
hla0496         :::Q:::::D::::::::::Y::::::IV:::::S::::::I::K::::::::L:VTAG:
Hmu2427         E:RST:DI:::SG::::::::::S:::AV::::::::::::E:::::::Q:::::::D::
rrnAC3254       :::::S:::::AD::::::::::::::::::::S::::::::::::::::::::::::::

consensus       HRAALAERYDAI--------GAPAEVRAVVAAVSEAVENDDAPDNEGLTTEDSAVESVAL
#oth            ..11...1.1..11111111.11122321.121121.2311..11..1..21231.111.
Hbo3739         :::::::Q:::::::::::::::GS:GS:::::T:::TT::::E::::::QT:N::A:::
hla0496         :::E::::::::AAEESFGD::T::LD::::R:TR:::S::::EG:::::T:AIT::FV:
Hmu2427         ::RE:::::A:::::::::::E::P:N:::T:::SL::DGE:::G::V::::::::::::
rrnAC3254       :::::::::::::::::::::::::I:TI::SL::::S::::::::::::::TT::::::

consensus       LESDPEAVPTFGG-VAVAQDVPAGEHRLTVNGAGVAPHSEQLSV---SEDE---------
#oth            1....1.....2.12.1221112.2..1...1..21.1.1322.2222121111111111
Hbo3739         ::::::::::::::::LLR:::P::::::::R::A::Y:Q::::SDAT:N:TATNNATET
hla0496         I::::::::::::GI:::NGI:E:D:::::::::Q:::::E:A:::::A:::::::::::
Hmu2427         :::::S:::::R:::::::G:D::Q::::::::::E::::SIT::::-::R:::::::::
rrnAC3254       :::::::::::S::L::V:::::::::F::::::::::::TV::PET::A::::::::::

consensus       --------------------------GVTAAGVDGEIPLVARENATKLEVDPAESDADLT
#oth            111111111111111111111111111213......1...1111.11121122121322.
Hbo3739         ETAAGGTDDATAEETESENEADQTPP::AV:::::::::::SGD:V::R::ADGT::T::
hla0496         ::::::::::::::::::::::::::PL:T:::::::::::::::::V:LSD::::I:M:
Hmu2427         ::::::::::::::::::::::::::::::::::::::::T::D:::VT:::T::ETEV:
rrnAC3254       :::::::::::::::::::::::::::P:R::::::V:::::::::R::::::GA:S:::

consensus       DLAVEDDFAGRLYDAPVAGPDAVYVHRGGAYTTEVRDADDEIGAFRVNPAPEAAGA----
#oth            13.1....1..1..111311......2.....1.1..3..11..2.11.22.23322211
Hbo3739         :V::::::::::::S::N:S:::::::::::::::::T::A:::::::::E:PSVT::::
hla0496         RT:::::::::I::SA:D:S::::::A:::::::::::::::::Y:IK:::::::SGEPI
Hmu2427         :F:L::::G::::::::E::::::::::::::G:I::S:::L::V::::TD:DRI:::::
rrnAC3254       ::::::::::::::::L:E:::::::G::::::::::R:::::::::::D:::DT:AT::

consensus       -IDRPRTGKASLASFLADIAEETRAEVAE-------GADDDGDDDDDDGSSG--S--SEG
#oth            1111.2..11...1.1.1111..122132111111123132.232222222122122231
Hbo3739         ::::::::::::::::::VTR::ATT:Q:AAEGTDG:G:KN:SGG:KNE:G:DD:GTGG:
hla0496         R::::E::A::::G:V::V:::::::::A:::::::V:AES::::S::::::GG:DG:::
Hmu2427         :VE::T:::E:::::::T:T::::::I-:::::::::L:L::----------::-::---
rrnAC3254       :::E::::::::::::::::::::QS:LD:::::::EM:::::S:::::T::::-:::S:

consensus       GSANAIQGLERALAAAVAAAERAAERAEAGDREGADRQLEAVADRLARVADRLEAASDGL
#oth            222..11..211.1.3231.2..21..231.2211112.2113222312221112.211.
Hbo3739         P:::::H::TKS:E:IA:::D:::::::SN:AP:::KA:::AT:N:Q:AK::::::::::
hla0496         :PS:::H::::::::::DN::::E:::RE::K::TN::::N:LE:I::IQE::A::RE::
Hmu2427         -R:::V:::V:::E:TGS::Q:::R::AD::::::::R:V::QSGFEQ:::N::R:A:::
rrnAC3254       ::G::::::::::::V:E:::::T::::::::GN::K::Q::::::R:::T:I:D:::A:

consensus       PDPLANAARRRLEQATRRVEQAQAAEKL
#oth            111221.211.12..21.21..1211..
Hbo3739         :::A:::::N::D:::::S:::L:::::
hla0496         SPG::::TD::I:::::::K:::ES:::
Hmu2427         :::IER:VD:::S::RK:::::LD::::
rrnAC3254       S:::S::::::::::D::T::::::D::