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4 genomes BUD2088 4 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnB0241

HVO_A0523

Hbo3599

- - -

NP2608A

-

Pairwise sequence scores
Consensus score3550 rrnB0241 HVO_A0523 Hbo3599 NP2608A
2440rrnB0241 3567 1725 1893 1952
2454HVO_A0523 1725 3880 1946 1795
2575Hbo3599 1893 1946 3512 1944
2600NP2608A 1952 1795 1944 3582

523 symbols
consensus       --------ATLGIAGVGAYAPRLRITAEAFREAWGRFGAAGVDEKAVPDADEDALTMGYE
#oth            1111111232211.11...1.12122.22212...21212.12221.22....11..12.
rrnB0241        :::::::MTAA:L:AI:::::::::D::E:EA:::::D::::::::::::::::V:::V:
HVO_A0523       MSADDPAR:::::::::::V:::YLP:S:Y:::::KG::P:::RV::A:::::T:::AT:
Hbo3599         ::::::::M::EL::::::::QTYV:::TI:::::Q::GD:IQQTS:TG::::T::::::
NP2608A         ::::::::-MT:::::::::::F::::A::ED:::::E::::E:::::A:::::::::::

consensus       AARRALRAADVDAAAIDHLAFATTTPPNAEEDAAARLASILGLDDDAATRQFTGSTRAGA
#oth            .11...3..221131122.221111..22..2321..213.113121313221..12..2
rrnB0241        ::::::T:::ASG::VA::::::::::M::::L::::C:::NVP:::K:QTI::::H:::
HVO_A0523       :G:::::::G:::GD:::::L:::::::D::EI:V::::L::V:PSVP::::G:::::::
Hbo3599         ::T:::S:::I::E:VTT:I:G::::::E::S:T:::::F:::T::V::T:L:::AN::V
NP2608A         ::T:::D::A:::TD::W:GV:SSR::I::::VS:::GAM:::S:A:TRHV::::::::T

consensus       RALAATLDA----GDGGTAIGLVVASDCPRGAPDSDVEHAAGAGAAALVLAEDGPGVVDD
#oth            31.312211111111222232..122.2.2.2.1122211....12.2.1321.222132
rrnB0241        Q::D::M:G:::::PF:ED::::II::::::D:::E::::::::SV:::VDD::::T:IE
HVO_A0523       V:::::VE:TQNV:::ASSPR:::VT:S:::::E::EAAG:::::T:::::::::L:::A
Hbo3599         NG:TLG::::::::P:E::--::::::A:L:::::::::::::::::V::S:G:T:::T:
NP2608A         :::W:C:::::::V:A:::T:::::A:::A:T::DGID:::::::::F:VGP::GARIV:

consensus       RAEHTAPYPGTRFRRAGEAETRGLGVTQYDRQAFTEAVGGAADRLDADT---DPDAAAVQ
#oth            11222221..1...33.221.211.1.1.1.2.1121122.122.1222211111.1.22
rrnB0241        ::S::EA:::::::TG:DDR:T:::::::::E:::TTL:S::::::VPME::TV::::::
HVO_A0523       VG:FGD:A::A:::GF:S:::ESI:::::E:D:Y:R::V::VEA:GI::AEL::::V:LT
Hbo3599         ::T:::T:::::::P:::S:::S::::::::::YR:::S::VSE:G:::::::V:::::G
NP2608A         :::YA::::::::::T:::::::::I:E:::::::::::A:::::::ID:::::A:::I:

consensus       APDGKLPYRAAGALGVDAATIAAAATVHELGDTGAASPLLGLAKALADGAD---------
#oth            2.........11111.1111.1.131.121..2...223111121112121111111111
rrnB0241        S:::::::::T:::::::::::::D::SS::::::::AF::A:T:F::::E:::::::::
HVO_A0523       :::::::::::N::D:EP:R:::GTV:SRT::A:::G:V::::S::DSAG:AGADESDGR
Hbo3599         G:::::::::T:E:::::E::Q:G::::::::::::M:::::T:::DN::::::::::::
NP2608A         :::::::::::::A::::E::Q::S:::::::L::::VPVS:::G::::RE:::::::::

consensus       ----RVLAVGYGSGAGADATAAVADGD---------VPTEAALDGDVELSYAEYLRRRGV
#oth            111112.312..111.13.21322213111111111..12321..211...111..2..2
rrnB0241        :::::::IAA:::--::S::LF::T:P:::::::::::VNT::::A:S::::A::::::E
HVO_A0523       SPATS::L::::G::::T:L:LSTEATDTNAAASSV::V::V:::::::::::A:::::T
Hbo3599         :::::I:V:::::--:SE:::::I::S:::::::::::::SDR::T:::::G::::I:::
NP2608A         ::::SL:::S:::::::::F:VA::::::::::::::::RM:::::AS::::::::Q:::

consensus       ITAGEPAGGGAYVSVPSWRRTIPQRHRLVAGRCAECEALSFPPEGACADCGELAS-YDAV
#oth            1.311.3.........1.2.11...1.....2.21.11.2...1...31.231321113.
rrnB0241        ::RD::E:::::::::::Q::::::::::::::SA::::N:::T:::T::H:RT:DFE::
HVO_A0523       ::G:::::::::::::T:K::::::::::::E:T::G::::::::::::::S::G:::D:
Hbo3599         V:P:::D::::::::::::::L:::::::::Q:::::S:A:::::::SS::T:D:::ES:
NP2608A         V:::P:S:::::::::::::SL:::Y::::::::::G::::::::::D::NG:VA:::P:

consensus       ELPGTGTVEAATTIGQGGAPPEFVEQQARAGSFASAVVALDAPSGE------RTVSAPAQ
#oth            2.1.1..1..1.2.2........11..312.2132.11.11212.211111121..1.11
rrnB0241        ::::::::::V:::R:::::::::A::SKS:Q:D::II::HSQ:::::::::Q:::V:::
HVO_A0523       T:::::::::::A::::::::::::::Q:::::PV::::F:G:G::GGETDE::::::::
Hbo3599         A:::::::::::V::::::::::::::::D::YV:::::::::D:G::::::-:::::M:
NP2608A         ::S:E::I::V:::S::::::::A:::D:::DY:A::::::::::A:::::::S::V::M

consensus       VVDAAA-DPAIGDRVEATIRRIYTQEGVTRYGFKVRPAAARR-
#oth            12223323221.1212213..1.1....2...1.221233121
rrnB0241        :LQ:TD:EVT::TP:VL:T:::::::::I:::::AQV:SQ:::
HVO_A0523       ::HSP:GT:::::::::VP::::E::::V::::::V:TE:::E
Hbo3599         :::TDE:K:::::ALT:::::V::::::::::T:M:::DS:Q:
NP2608A         GT:::PA:FDV:::::T:V::::::::::::::::::M:DK-: