4 genomes BUD2095 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3079 HVO_1232 Hbo0325 - - - NP3402A -

Pairwise sequence scores
Consensus score	1446	HVO_1232	Hbo0325	rrnAC3079	NP3402A
1246	HVO_1232	1513	1209	989	1022
1222	Hbo0325	1209	1524	983	993
1159	rrnAC3079	989	983	1572	1061
1191	NP3402A	1022	993	1061	1427

215 symbols
consensus       -------------------MDDDAMARFPVPDRDDLPEDLRERIEEETERAGFTPNVFAA
#oth            111111111111111122222.11.31.11.1311..2.12...22..1.1.....1.2.
HVO_1232        :::::::::::::::::::::::::R:::::::::::D::::::DD::::::::::::::
Hbo0325         ::::::::::::::::MVEL:::::T::::::E:E::A::::::::::::S:::::::::
rrnAC3079       MGRQATKFQAGAGRTGGMADS:TV::::DT::I:::::::Q:::A:::D:::::::I:P:
NP3402A         ::::::::::::::::::::T::::GN::::ELS:::::IK::::S::::::::::::S:

consensus       FAYKPSHFRAFFEYHDALVDDTALEREEVEMIIVAVSGVNDCLYCNVAHGALLRIYADAP
#oth            1..1.....1..2....1.1112.1.1.1..11.1.....1.1..2......1.1..11.
HVO_1232        :::::::::P:::::::::E::D:::H:::::::::::::H:Y:::::::::V::::KD:
Hbo0325         ::::::::::::D:::::::::::D:::::::V:::::::H:Y:::::::::V::::KD:
rrnAC3079       M::R::::::::A::::::EE::::::::::::::::::::::::I::::::::::::::
NP3402A         :::::::::::::::::I::ESP:::::I::L::T::::::::::V::::::::V:::::

consensus       KLADQLAANHRTADISEKHKAMLDFAVKLTESPAEVDEDDLERLREAGFSEEAIWDIGSV
#oth            2..1.111.1.2.112.2121...1..1...1.321322..2..212.1.2111...11.
HVO_1232        L:::::V::Y:::::P::::T:::V::::::::V::GG:::Q:::D::::::::::::A:
Hbo0325         T:::::V::Y:Q::::::RM::::V::::::::R::T::::D::A:V:Y::::M:::A::
rrnAC3079       :::E:V:::::::E:N:T::::::::::::::::RIEDE:::::E:H:Y:RR::::::::
NP3402A         :::E:::T:::S::L::P:R:::::::T:::T:GK:::R:::::::::::T:E:::::::

consensus       TAFFNLSNRMAMLADIRPNDEFHTLGR----D---
#oth            2.1......1.21..1...1..12...22221111
HVO_1232        ::::::::::::F::M:::E:::::::EPRD::::
Hbo0325         ::::::::::::F::M:::::::S:::TQNV:SDK
rrnAC3079       A::::::::L:Q::::::::::YN:::::::-:::
NP3402A         V:L::::::::T:::::::E::Y::::::::-:::