4 genomes BUD2103 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0884 - Hbo3091 Hmu1569 - - NP4234A -

Pairwise sequence scores
Consensus score	2617	rrnAC0884	Hmu1569	Hbo3091	NP4234A
2420	rrnAC0884	2829	2304	2174	2196
2389	Hmu1569	2304	2659	2081	2183
2253	Hbo3091	2174	2081	2669	2218
2377	NP4234A	2196	2183	2218	2567

390 symbols
consensus       ---------------MDDIRFAVLGTGGIGRRTLEVATHKDGLTPVAACDRNGVAIDHDG
#oth            111111111111111..1.1..............11122122..1......1...1....
rrnAC0884       ::::::::::::::::::::::::::::::::::::SQ::::::A::::::::::L::::
Hmu1569         :::::::::::::::::::::::::::::::::::::::R::::::::::::::::::::
Hbo3091         MNDADKPTTDTTTTT::E::::::::::::::::D:SKQ:PE:::::::::H::::::::
NP4234A         :::::::::::::::::::N:::::::::::::::Y::E:TA:::::::::H::::::::

consensus       LDVDELLAATEGNIASGP------------------D--D-A-DGGAA----A-AVKQHG
#oth            .......3........112111111111111111111221212...121111121..11.
rrnAC0884       :::::::E::::::::::QSGPEQSSGDEPRDSGPE:DP:M:A:::T:TAET:DG:::::
Hmu1569         :::::::D::::::::::S::::::::::::::::::ER:V:P::::::::::GG:::::
Hbo3091         :::::::S::::::::--::::::::::::::::::-::-:-::::TT::::-::::ES:
NP4234A         ::::::::::::::::--::::::::::::::::::-::-:-:::::V::::-:::::S:

consensus       EQAGIAASSQAEPTETPIDDIIAESDAIDAVLIALPNLEHDFIPRVADRFADADYEGVLI
#oth            .22.11..2.122.......1...1.1.1...2....1.........2..11...11.11
rrnAC0884       :::::V::::G:::::::::::::::::N:::L::::::::::::::E:::E::::::M:
Hmu1569         :::::V::D:GRE:::::::V:::A:E:::::M::::::::::::::Q::::::::A:::
Hbo3091         :NK:V::::::VS:::::::V::::::::::::::::F::::::::::::VE:::S:::V
NP4234A         :MR:V:::T::::::::::::::::::::::::::::::::::::::::::::::::::V

consensus       DVLKRSRVIGMLDDREDALEDAGITFVCGAGATPGFLTGAAALAAQSFVEVEEVDIWWGV
#oth            ............1..2131221.............1.............11.1.1.....
rrnAC0884       :::::::::::::::::L:KES::::::::::::::::::::::::::::::::E:::::
Hmu1569         ::::::::::::E:::QR:V:::::::::::::::L::::::::::::::I:S:::::::
Hbo3091         ::::::::::::E::T::F:S::::::::::::::::::::::::::::T::::E:::::
NP4234A         :::::::::::::::V:SF:::::::::::::::::::::::::::::::::S:::::::

consensus       GLKSGYEDNRGTVREDIAHLDGYDIETAREMSDAEIEALIDEHDGRLEFHDMEHADDVLL
#oth            ....................11....11..1.11....21.....11..2..........
rrnAC0884       ::::::::::::::::::::::::::::::::E::::::::::::V::::::::::::::
Hmu1569         ::::::::::::::::::::::::::S:::::E::::::::::::::::D::::::::::
Hbo3091         ::::::::::::::::::::PE:::::V:::::E::::V::::::V::::::::::::::
NP4234A         ::::::::::::::::::::::::::::::L::E::::IV::::::I::N::::::::::

consensus       ERAGICDAEDVTVGGILDVRSDEKPTTTTVSVTGRTFDGERGTNTFQLDDATSMEANVNG
#oth            ....1......1...1...11.........2...1.....11....1...1.........
rrnAC0884       :::::::::::H:::V::::::::::::::::::T:::::T:::::E:::::::::::::
Hmu1569         ::::V:::::::::::::::Q:::::::::::::::::::T:::::::::::::::::::
Hbo3091         :::::::::::::::::::T::::::::::R:::T:::::::::::E:::::::::::::
NP4234A         ::::::::::::::::::::::::::::::E::::::::::A::::::::D:::::::::

consensus       PALGYLKAAVRRNRAGEYGVFGPADLMPGF
#oth            ..1....11.11..1.2...1..11.1.1.
rrnAC0884       ::::::::G::N::::H:::::::::::::
Hmu1569         ::I:::::::L:::::D:::Y:::E:::T:
Hbo3091         :::::::S::::::G:::::::::E:L:::
NP4234A         ::::::::G::::::::::::::T::::::