4 genomes BUD2105 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0326 - Hbo0041 Hmu1212 - - NP4204A -

Pairwise sequence scores
Consensus score	1783	Hbo0041	NP4204A	rrnAC0326	Hmu1212
1106	Hbo0041	1903	850	743	785
1238	NP4204A	850	1830	902	860
1182	rrnAC0326	743	902	1733	966
1247	Hmu1212	785	860	966	1770

252 symbols
consensus       MLGAPRWLTLEVKYLDRAREFYEARLDLPVREESDDEVAFDAG-DTELRLRRPGAVPRGG
#oth            .12322211...11112122..232.3.22322222222221.1221121.2.21.....
Hbo0041         ::TRFCR:G::::::EA::::::T::G:VPTN:::TT::Y:V::Q:TVV::::VS:::::
NP4204A         :::DC:::::::TS::SVAP::RE::S::LI:AT:RQYR::::GSS:::::::T::::::
rrnAC0326       ::SS:A:I::::::P:::TA::::F:E:D:VS::P::AVLA::::::::::S::::::::
Hmu1212         :V::::H:::::::::::::::GSV:::::::DGG:::::G::::AT:WI:T::::::::

consensus       LHTHYAFSCPRAAYDDWYDRLDADLDLAEHTFGDARSLYCYDPDGNCVEIAG-DE-----
#oth            1.....11322311.1.221.1321123.22..131...3..22.....11221121111
Hbo0041         V:::::::TT:E:::::MTE:-S:::P::F:::SSH:::V::A:::::::G:I::AGGKS
NP4204A         ::::::::::AD:::A:W::::::F::Q:VD::SM::::L:::A::::::::A::P::::
rrnAC0326       ::::::LTI:ERE:::::::::ERF::V:::::::::::F:::Q:::::LGE:--:::::
Hmu1212         ::::::::VS:::A::::E:::RQ:TVD::R:::D:::::::S::::::L:A:--:::::

consensus       ----RGVAGDG--------LTGIFEVVLEVEDLDSAEAFYRALGFEVVDRGDNRRRVRLS
#oth            11113223.211111111112.1..2.1..22.321131111....11.1.2313.1..1
Hbo0041         EDDRE::S:::EQTPANLP:::::::::::T::ER:::QF::::::::::::E:P:::::
NP4204A         ::::S:T::RT:::::::::S::::::F::A::PAS:Q::T::::::::::E::T:T::T
rrnAC0326       :::::A:D:A:::::::::V::L::L:::::E:S::VE::TT::::L::D:RDEG:::::
Hmu1212         ::::TVDT:::::::::::VV:L::I:::::A::::VD:::T:::::I::::Q::::::T

consensus       TGPLDLELWEPQLGIADARGGVHVDLGVRAEDPAAAAEAVAEAAHAVEQVDNG-VRIRDP
#oth            2.22.1...1.1..1......1..13123122.3232231223133213213.1212..2
Hbo0041         -::V:::::::::::::::::L::E:AF:TD::H::V::GGPW:VGP:EIE:::L:V::A
NP4204A         N::::I::::::::L::::::::::V:IN::S:::V:DN:::RVTKR::L:D:A::::::
rrnAC0326       ::D::::::S:R:::::::::::::F::V::::KST:RE::DD:L::TS::E:::Q:::R
Hmu1212         ::EI::::::::::L::::::::::W::E:AA:RTLT:R:R::::S::H::G::S:L:::

consensus       DGHYLTLVRA--
#oth            ...111113321
Hbo0041         :::VIEF:TDC:
NP4204A         ::::::F::SER
rrnAC0326       ::::::::S:::
Hmu1212         :::::::FEP::