4 genomes BUD2116 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3475 HVO_0744 - - Hut0273 - NP6258A -

Pairwise sequence scores
Consensus score	2825	Hut0273	NP6258A	HVO_0744	rrnAC3475
2236	Hut0273	2959	1841	1713	822
2248	NP6258A	1841	2947	1742	909
2138	HVO_0744	1713	1742	2806	941
1152	rrnAC3475	822	909	941	1536

389 symbols
consensus       ----PD-----------G-ASEG--APLRRSIEVEYWVVDDEGRLTDPGDLVDASPGVER
#oth            111211222222222221232222231211111111112232122121231211221211
Hut0273         :::M::RIDPTTGAKQD:GGND:GV:::::::::::::I::::::::::E:S::GE::::
NP6258A         MSES::THRSPNRTTTT:S::::::E:I::::::::::::G:::::E:E:::::::::::
HVO_0744        ::::--:::::::::::-:M::SASD:::::::::::::EED:SF::::G:::::::A::
rrnAC3475       ::::--:::::::::::-:----::-----------------------------------

consensus       EFVEPLLEIKTTPCESTAALRQELYERLDRVLRRAEDQGKRLVPLGTPIHDGEIADLPSE
#oth            111212112111112221311312221133113113332121111211332232322222
Hut0273         :::::::::::::::::::::T:F:::::G:::::S:H::::::::::M:::::::R:G:
NP6258A         :::A:::::::::::T::Q::E::FT::E:::Q::KK:D:G::::::::YQ:L:E:::::
HVO_0744        :::::V::V:::::G:A:E:::::::::GD::S:::EV:::::::A::VS:ETVTE:E:D
rrnAC3475       ------------------------------------------------------------

consensus       RTRIQDRVVGSDFEYVRHCAGTHIHVEQQPGREIDQLNALIALDPALALVNSSPYFDGER
#oth            111112122121121211121112111121123121212121211111111111123232
Hut0273         :::::::::::::::::::::::::::::::HV:E:::T:::::::::::::::::GH::
NP6258A         :::::::IL:E:::::::::::::::::::::K:::::::::I:::::::::::::E:TY
HVO_0744        :::::N:::::::Q:A:::V:::V::::R:::::::Y:::V::::::::::::::Y::K:
rrnAC3475       ------------------------------------------------------------

consensus       LTTGARSQLYRRMAYNSLPHQGRLWSYAEDTAEWARRLERRYEEFVTAAVDAGVDRETVE
#oth            122111121112.1.221....1..2.22.12..32...1.12..123223211..2121
Hut0273         :::::::::::::::ET::::::::P::::LE:::K:::H::G::::QSIIT:F:::R::
NP6258A         :::::::::::W:::::::::::::::I::::::EA::::::::::AEG:T:E:::::T:
HVO_0744        :AA::::K:::::T:DDV:::::::R::D::R::S::::::F:::LVR:EEE::::A:I:
rrnAC3475       ------------:::::V::::W::::LN:::::D:::::::D:::::::::::::R::A

consensus       ANFDPESAIWTPVQLRAEFGTVEWRSPDAALPSQALRLADDVADLVDRLRDAEVRIEGDT
#oth            12.2...11.......11.1........21...1311..121112221122121..1.12
Hut0273         SY:G::::V:::::::ER:S::::::::::::::L::::::::SI:S:VTE:A::::::R
NP6258A         :C:::::SV:::::::E::S::::::::T:::::IV:::::IV::I:H::::::::::::
HVO_0744        ::::::::::::::::::::::::::::CS:::D:::::NS:::V:K::D::TL::D::S
rrnAC3475       :::E::::::::::::::::::::::::::::::V:Q:::A::S:M:H::GT::::::E:

consensus       GRVTDDAIVLPEFDAVLEYVNAAIRDGLDSDAVRSYLDRMGFDVDAYAPLAHEIDAPEEL
#oth            .1212131...1.1..22.122.121.12122.11.......2131.3.12222.22121
Hut0273         :GCAAGE::::K::::S:::D:::T:::::S:::::::::::S:E::D:::G:M:::A::
NP6258A         ::R:E::::::::S::E:::ER:V:H::S:::::Q:::::::NASS::::T:Q:::G:::
HVO_0744        ::::::RV:::::::::R::::::E:::::ET::::::::::::G::S:VS::::GR:TV
rrnAC3475       ::::::K::::::::::A:A:D:::::ATC:S:G:::::::::::::E:V:PTF:R::PV

consensus       TAADARELRLEHADRLEADVRRAASITAD
#oth            .3231.12..21.1..13.1121323231
Hut0273         :ESQ::DR:::Y::::::::::VS:::::
NP6258A         :V:KT::::::Y:E:::Q:LS::R:T:V:
HVO_0744        :::E::::::T::::::R:::N:VR-QRE
rrnAC3475       :PR::::I::D:::::QD:::Q::PVAL: