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4 genomes BUD2128 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1087

 - -

Hmu1793

Hut0981

 -

NP4172A

 -

Pairwise sequence scores
Consensus score1398 Hmu1793 Hut0981 rrnAC1087 NP4172A
1034Hmu1793 1567 842 859 785
1103Hut0981 842 1381 920 900
1149rrnAC1087 859 920 1398 917
1040NP4172A 785 900 917 1412 

212 symbols
consensus       ---------MFRRIADDIRTALAKDPAATSALEVALTYPGLHAVWAYRIAHALWERGRAL
#oth            1111111111212132.1.1.111....11122.1.1.1....1.31.2..111212321
Hmu1793         :::::::::::D:::::::F:K:N::::::T:V:L::::::::::WH:L:::CHR::L::
Hut0981         ::::::::::L:Q:L::V:::K::::::DGTA::L:::S::::::F::::::::::NYR:
rrnAC1087       :::::::::::D:LKA::::::T::::::::M:::::::::::I::::V::W::AND:::
NP4172A         MSLHNLIRTIR:HLRE::::::::::::::::S:::L::::::::G:::::::::::HTF

consensus       AARLISHVARFLTGVEIHPAAEIGERLFIDHGMGVVIGETAEIGDDVLLYHGVTLGGNSM
#oth            1.1211222.1...1....1.21.1.1.1...112.1........1.11........3.1
Hmu1793         ::A:LAY:G:::::I::::G:TV:::V:V:::::T:V::::::::E:VM::::::::K:S
Hut0981         :::I:::I::::::::::::::::::::::::::::::::::::::::M:::::::::::
rrnAC1087       L:::::::::::::::::::::::::V:::::::I::::::::::::::::::::::T::
NP4172A         :::AL:QCI:L::::::::::D::R:::::::AA::V::::::::::::::::::::D::

consensus       RREKRHPTVEDGATIGADASLIGDITIGENATVGAGAVVVDDVPPDTTVAGNPAEPIDAA
#oth            111.....22.1.21.12.111.1..1..2.1....11.12..2121..1.2..1.1112
Hmu1793         EPV:::::I::R:L:::::T:::::::::D::::::S::::::::::::V::::R::::L
Hut0981         :::::::::::::K::VR:::::::::::::::::::T:LS:::AE:::::V::::::G:
rrnAC1087       :::::::::K::::::::::IM:P::V::::S:::::::::::T:::::V::::::VG::
NP4172A         ::::::::LA::::V::N:T::::::V::S::::::S:::E::A:GQ::::S::::V:GT

consensus       GDAEGRPDPDRDDG------------------
#oth            233233212322.1221111111111111111
Hmu1793         E:E::V::A:E:::VHPDCAPGVEPRWREVQS
Hut0981         ATV:T:V-:C:::D::::::::::::::::::
rrnAC1087       :V:SPN:::IIA::::::::::::::::::::
NP4172A         :-------SE:V::PA::::::::::::::::