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4 genomes BUD2132 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC3042

 - -

Hmu2792

Hut0296

 -

NP2682A

 -

Pairwise sequence scores
Consensus score1427 NP2682A Hut0296 rrnAC3042 Hmu2792
368NP2682A 1504 201 238 236
881Hut0296 201 1551 616 619
1081rrnAC3042 238 616 1535 827
1036Hmu2792 236 619 827 1388 

234 symbols
consensus       ------MADWVDRAD---------ELLYDGEDIEERVRLGRGGVVVTSHRVLVFTPDREG
#oth            111111231121.2111111111121.121.33322.122312.1..2111.2.1.2211
NP2682A         MVPGVPDPGV:::L:IQRDEPDPADR:HAD:TLLTT:::SP:W:A::ERAL:T:H:::DP
Hut0296         ::::::::::S::VE:::::::::::::E:::VT:::SA:DAH::::T::::A:::AM::
rrnAC3042       ::::::-M:::A::E:::::::::S::::::V::AD:::D::::::::::::::::::::
Hmu2792         :::::::TG:L::::::::::::::::::::ESI::::I:E:::::::::::::::GG::

consensus       ANFRQVDRPNVTGVAVRTSGEWAFL-------QRALKAGLVGIVLLAAGQTVSLDSLVGN
#oth            312.212.1..21121322.223..1111111331221111.2.1122131.12122223
NP2682A         KVV:-TP:A::::IT::RT:GRG::RYVPGALLY::G:::::V:::----:::PGQFL--
Hut0296         E:::::E:::::D:::KSG::AR:::::::::MMG:RT::F:::F::V:LL:DFGA:M:D
rrnAC3042       S:Y::::::::E::D:T:::D:S:::::::::ELGV::LV:::::V:::M::::::::::
Hmu2792         ::::D::::::V:::AE::::::::::::::::::I::LV::G:::I:::::::::M:EG

consensus       IDL--GGSAGAVGIGGMLGMLQTMLSLMAQLDDLLRLFGALALLFAAVVLGVYLWSRDAA
#oth            232222222212.2.121122.12222222.122122212.111211.1221112..133
NP2682A         ---::-TVPD:P:A:QLDAII::LGWAVRL:GSV:VFTAI::V:T::::VLYW:F:::V:
Hut0296         :::TDT::T:QL::::I:::V:G:I:IIYS:::YM:ML:::L::A:L:PTA:::Y::ETH
rrnAC3042       VS:DS::A:S:::::::::::::::T::::::::M::::G:::A::::::::::::::RL
Hmu2792         :EI:::A:::Q::M:::::L:::F::::::::E::T:::::::::G:::::::A:::E:E

consensus       LVVRVAGGE-DLELPA-PADAAEVLARLREAILPEAIPA---S-------D-L-
#oth            112311121111222221312322221112212123311222122222221212
NP2682A         FIIERGDA::PV:C:TNRQVGQRA:RE:::TLN------:::-:::::::-:-:
Hut0296         ::LT::::::::PIASS::::E:T:::::::::::G:::GSE:RWSIDLL:R:G
rrnAC3042       ::::::::D::V::T:::D:ES-:VD:IEA::V:::P::DAG:APQSAPD:P:P
Hmu2792         :::S:::D:A::R:::::E:::::A:::ESV:::RES--:::-:::::::-:-: