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4 genomes BUD2142 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi

VNG2314

rrnAC1665

 - - - -

hla2641

NP2884A

 -

Pairwise sequence scores
Consensus score1608 hla2641 VNG2314 rrnAC1665 NP2884A
1044hla2641 1854 785 861 814
1174VNG2314 785 1618 927 887
1262rrnAC1665 861 927 1838 971
1176NP2884A 814 887 971 1633 

257 symbols
consensus       ----------------------------MAAGSDGDGRADPDPGA-AVDDAFA-----AL
#oth            1112222222222222222222222222333321.313322221223211222111113.
hla2641         :::MNGMDTDRGGPDAADGTEEPGEPGEPGDLN::LTLPG:::P:DL:EG:VDEGWAMQ:
VNG2314         ::::::::::::::::::::::::::::::R::R:::PL:::IP::::::::::::::F:
rrnAC1665       MRRQHHIPVEGAVAGINTSLGLFAVVPQFT:M:::S::S:SR::TIGLE:S:K:::::K:
NP2884A         ::::::::::::::::::::::::::::--MTA::G:G:RAAE:-:--::IL::::::::

consensus       FRNGRTNAVIAWALVAVLAGVFLESVLDADLRWILFVGAVAVVVLVPPVAFRDWRTMLPW
#oth            ..1112..2...12.11.211211.2113.1112212122121.22.1112131.2....
hla2641         ::::::::L::::M:T::::::V::LF:F::LSMALI:SI:A::VA:A::A:TP:A::::
VNG2314         :::STV::::::LA::::G::V:D:A::V::::LV:T:::G:I:A::::V::S:::::::
rrnAC1665       ::D:::::::::::::I:TA::V:::FE::Y::::::SV:GF::::::::::E::V::::
NP2884A         :::S:L::I:::L:::::::AL::::::R::L:::::S:T:::::L::A:YF::::::::

consensus       ELLVLALLPILVRGLFGGELGTFASYLSLAALALLIIVELHMFTDLALTHWFAVVLVVLT
#oth            ...211...1.1.1.2..11.1.13.212..1..21211..1..3.11.....22...11
hla2641         :::G:::::::::A:L:::::I::T::AI:::::A:T:D:::::T:RV::::::::::M:
VNG2314         :::CVG::::::::::::TV::::V:V::::V::VVVG:::T::S::V:::::A:::::V
rrnAC1665       :::::::::::A:::V::TV:::::::::::::::V:::::::::::::::::IG:::::
NP2884A         ::::V::::V:::::::::::::GY:F:V:::::::::::::::E:R:::::::A:::M:

consensus       TLASVAVWAVFRWNADRHFGTAYLST--------NEALMTEFLWVTLAGLAAGVLFDAYF
#oth            .1.22.1.112..21.1221.21.1.11111111.2...2.121.....12..2..1311
hla2641         :M:TA:::TIL::::::MYD:::::::::::::::::::I:WIY:::::IV::T::::::
VNG2314         ::::G::::::::T::Q:::::::T::::::::::H::::::V:::::::::::::ALAL
rrnAC1665       :::A::::T::::::::FL::S::T::::::::::::::::W:Y:::::::::::::G::
NP2884A         ::::::A:::V::IL::::::EF:::PGMSQDAA:A:::G::::::::::L::I:::S::

consensus       RRRGRRLRRALRRVVRR
#oth            .2.211.2.2221123.
hla2641         :Q::V::::::Q:::::
VNG2314         :::T:W::::TS::TE:
rrnAC1665       :::D:::W:GI::M:Q:
NP2884A         :H:::::G:H::G:MG: