4 genomes BUD2169 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0377 rrnAC1745 - - Hmu2175 - hla1432 NP1780A -

Pairwise sequence scores
Consensus score	2400	rrnAC0377	rrnAC1745	hla1432	Hmu2175	NP1780A
1577	rrnAC0377	2415	1469	1099	1111	1200
1728	rrnAC1745	1469	2414	1174	1216	1369
1533	hla1432	1099	1174	2277	1135	1296
1657	Hmu2175	1111	1216	1135	2485	1384
1837	NP1780A	1200	1369	1296	1384	2449

345 symbols
consensus       MMTSESTPAG-R-R-VGSLRSVRRLALLTVG-AFWGWLLVRWANDFVLLDGVGVARG---
#oth            121332322332312333342321222222132..2.1231.222223222233432111
rrnAC0377       :S:A:::TSPL:D::::TVFT::P:TIGLT-:L::I:V:A::TT::::AGVF:LD:::::
rrnAC1745       :G:P:::T::RTL:ARAAGLTDQP:T:::::::::T::V:::T:::-::::ALIE:N:::
hla1432         -:A:ATR::TV:E:VAD:D:::G::L:V:A:AL:::::V:S:V:RW--:G::I:PI::::
Hmu2175         :S:DQTQ::A:-:-:::D:PGR::V:VV:::VV::T::SL:::YHNTV::A:AT:L:VPD
NP1780A         -:::RDDAL::-:-:TS::S:TG:T:::V::I:::::::T:::Y:W:INP::::SSR:::

consensus       -----------EPFLPAAPFEAAAGTIAGLAADLGPLGAPLGWLAWLFEFAAFAIEYLPA
#oth            111111111112122.211122.23234221.3113324233131342323.232333.1
rrnAC0377       :::::::::::T::::::::LT::D:V:S:::P::AA::::A:F:ETLR:::D:TA::::
rrnAC1745       :::::::::::TS:F:T:::::::S::G::::S:::V:V:V::V:GF:::L:AS:P:::P
hla1432         :::::::::::Q:LV:PGAV:T:L:S:P:I::YAAD--------------:::VV:MT::
Hmu2175         LIRSETAVLAR::W::T:::AN::E:LTAVG:::::::LLAE::::P::LT:::::GG::
NP1780A         ::::::::::::::V::G:::::G:WFE:::::A:V:ST:::::::::D:I::GVTVM::

consensus       LAAGAWLTVLLTLLSMVLGFFIAVPLSVARVYGGRIARWLSLAYTELIRGTPLLAQLFVL
#oth            113.313.121.231331.211.1..1.2....21442211.2....3..........1.
rrnAC0377       ::H:I:T:::::VF:VC:::AL:L::::V::::::W::::A:S:::::::::::::::::
rrnAC1745       ::T:V:A:I:::::GIA:::::::::::::::::TLT:S:A:G::::F::::::::::::
hla1432         :SR:T::::VI:AM:L::::::::::A:T::::-:FSA:::::::::L::::::::::::
Hmu2175         M::::FI::Y:::A:::::LA:::::::::::::::VGTV:::::::V::::::::::L:
NP1780A         ::::::::IV::V:G:FF:I:::::::::::::S:PL:::::::::::::::::::::::

consensus       YYGLPLAQIIRELPGVGVGFIPRAAVWVAVIGFTLNSAAYQAEYIRGALQSVDEGQLTAA
#oth            .1112.243222212113.32112111..122..1.11...1..1.21.3..23..11.1
rrnAC0377       :FATS:T:VL:GV:::::::::AQ:F:::::S:::::::::S::L:AS:D:::G::::::
rrnAC1745       :FAT::TT::::::T::A::::AQ:F:::::A:::::::::S::::S::N::P:::::::
hla1432         ::::N::SYV---::SVS:VFA:DV::::IL:::::G::::::::::::E::E:::I::G
Hmu2175         :::::::EE:EG:GL::E:AV:::::F::IV:::I::S:::::::::::::::S:::V::
NP1780A         ::::::SG:::::::::::PV:::::::::::::I::S::::::::S::::::A::::::

consensus       RSIGLSKVEGIRHVVLPQGLRYAIPGWTNEFVYLIKYSSLAAFITVPELFRRARAIASET
#oth            .11....322.11.11.....1.1.1.1..11.........1..1.2..13112411111
rrnAC0377       :A:::::L::::Y::V:::::L:L:S::::L::::::::::S::::Q::YG:TSTL:N::
rrnAC1745       ::::::::D::::::::::::::::::S::L::::::::::S::::R:::E:TD::::::
hla1432         :A:::::::T:YY::::::::::::S:::::::::::::::::::::::YY::DQ:::::
Hmu2175         :::::::AA::::::::::::::::::::::::::::::::::::::::::Q::I:::DS
NP1780A         ::V::::T:S::::I::::::::::::::::I::::::::::::A:::::::::N:G:D:

consensus       FRYTELFVLVALLYLALVLTASLLMDRVEARVAIPGLGTASQ---
#oth            1111231122122.....212132.122.421.21.1.2233311
rrnAC0377       YQ:::::::::I::::::VS::A::::::SHT:TA:V:HTR::::
rrnAC1745       Y::::::::AG:::::::IS:::V:EY::D:::::::::T:R:::
hla1432         ::::LI::VTG:T:::::::::K::E:::E:::::::::E::E::
Hmu2175         ::V:DTY:V::V::::::::TA:A:::L::A::V::::P:DER::
NP1780A         :::L:MYLI:::F:::::::L:V:::SF:K::::::::::ADDRE