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4 genomes BUD2194 5 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1575

HVO_A0100

HVO_A0403

Hbo3523

 - - - -

HQ2319A

Pairwise sequence scores
Consensus score1324 HQ2319A rrnAC1575 Hbo3523 HVO_A0100 HVO_A0403
552HQ2319A 1367 234 332 410 400
472rrnAC1575 234 1012 318 317 295
577Hbo3523 332 318 1081 420 397
1127HVO_A0100 410 317 420 1336 1246
1092HVO_A0403 400 295 397 1246 1341 

178 symbols
consensus       ----MNHLDDISVEELRDTLDNVDGKKPTQRLLAAIAYKNGVTQDELADRYGVQRRTIYN
#oth            11112221112221112231132133.232.121.221131233231122112213.212
HQ2319A         MAKDG:KIP:L:::RV:EQ:ADERDP:VIK::T::RG:LA:LSP:GIGEK::WP:Q:V::
rrnAC1575       :::::GR::::TL:::Y:LK:QI:EG::RE:V::::GR:K:DQL:T::::H::VEK::R:
Hbo3523         :::::VK:::VDPD:::R::AE::SA:EAK::VV:LD:LDD:PVSV::::::IP:S:L:Y
HVO_A0100       ::::V::::E::::::Q:::::::::::::::::::::::::::T:::EW:::::::::S
HVO_A0403       ::::::::::V:::::Q:A:::::::::::::::::::::::::T:::QW:D:::::::S

consensus       WLDRFE-EESIEQAVSDDKRPGRPRKLSEEQRNQFQETLHQPPEEVGYDAPAWTPALAQE
#oth            ..1.111312212.32.2312.11211221124213131323.3.312.231.123.223
HQ2319A         ::::::::RDF:D:LY::EWS:::PE::D::FH::A:::N:S:::A:::VA::SSI:::Q
rrnAC1575       :::::::::P:G::PY:AP:::G:A:IEG:D:E:LF:Q:Q:L:T:L:::QQ::SAK:LLH
Hbo3523         :::::::T::::E:IT:ED::::::::D::D::RLRSH:DTT:R:YN:::DE:::E:VR:
HVO_A0100       ::K:LDTD::L:::::::::T::K:::::T:QSE::::V:E::::::L::::::::::::
HVO_A0403       ::K:LDTN::L:::::::::T::K:::::T:QIE:::IV:E::Q:::I:::::::::::D

consensus       HLEETYGVEYSIPHCRRLLKEAGLSYQKPRRTAAEADEDEQEAFYEELKKSGGRW---
#oth            2122121.21133232112221222221112221211122212222112212222111
HQ2319A         ::ISECD:AH:RR:VQ::M:::EV:WK:::PEP:S:::EDL:RDDD:::::RETG:::
rrnAC1575       YVK:E:::::HETYA----------------------------------------:::
Hbo3523         :V:H:F::T::VG:I::::RD--------------------------:QS:----:::
HVO_A0100       F::::::::::::S::::::::::R::::::::::::::::::::::::::::::TPP
HVO_A0403       F:::::D::::::S:::::::::::::::::::::::::::::::::::::::::TPP