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4 genomes BUD2207 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnB0068

HVO_B0355

 -

Hmu1433

 - - -

HQ1922A

Pairwise sequence scores
Consensus score2360 Hmu1433 HQ1922A rrnB0068 HVO_B0355
650Hmu1433 1469 361 359 391
1296HQ1922A 361 2453 902 858
1584rrnB0068 359 902 2406 1123
1604HVO_B0355 391 858 1123 2493 

334 symbols
consensus       -----ASDYTGDVTLNGGEETPVRLRDAEDVYVRRASVAGDLALRNAEYVFTGAPITDAA
#oth            122223232211211112222123332322222333123122323131111233231332
Hmu1433         :::::-------------------------------------------------------
HQ1922A         MNNAHEH:F:::I:::::::::ISVI:::N::F::N::T:NVK:I:P::::SSQRP:EKT
rrnB0068        :::::M:E::::::::::I:::::MSGL::M::QPD:ID:::D:::V::::::V:::P::
HVO_B0355       :MTRN::T:D:::::::S:RP::E:::PA::F:GG::::::::VQ:::::::H::V::D:

consensus       AVAD------AVETDIRGSLEDGYVQ--AVAGDIAIGDAEDVFIAANAADGAISARGAEQ
#oth            323111111132113231221121232232312333231211212331321232231312
Hmu1433         ----::::::----------------::--------------------------------
HQ1922A         VPS:::::::DI::TVS::I::I::PHN:IE:T:I:DG:Q::H:EP::IT:D:EIV:E::
rrnB0068        D:::::::::P:-:::T:T:::::TEPDG:H::L:V:T:::::::HG:V:::L::::P::
HVO_B0355       ::G:GTGGDA::::E:::::::::::::S::::VLL::::::::::D:::::V::P:::N

consensus       VFAAQATD-PA-APANYDVRVVGWKQSRSVTDPNTGVSVEGCRCTVEITDATADVELYLG
#oth            2233332121323233112322.1221212211321122313232223.31.21122213
Hmu1433         --------:--:MAE:SEL::::TRK:::LGEVSGTI:::SE:GS::F:-::D::V:TV:
HQ1922A         L:YD:L::S:Y:GHGV::AHG::::R:V::S::KH::::T:G:::A::::V:::I::IVS
rrnB0068        ::D:GTS:A:SRD::T:::T:S::Q:Q:E::::::::VLS::QS::NV:G::GS:SC::I
HVO_B0355       :Y:GE::-:::A::DD:::STF:::::G:A:::D:::YAV:MAHDIDL:KV:::::F::V

consensus       GENNEVRVRGRGAAVRVHIVGRDNTVSIGPYIDLETAGDTGFDNTIDA--EPQPADDLIE
#oth            .32122322.2212.31222.32.2.23211112223322.12.211311213113.111
Hmu1433         ::R:S:TA::S:ST::LS:D:DR:S:::ARSL:::IQ::E:VA:S::RHG:A:SGP::VR
HQ1922A         :W::TIDIT::T:M:T:YLL:SQ:::RTS:::::::DIQA:VE:::EQ::::V::S:I::
rrnB0068        :T:::LI:::-D:::E::::::::R:DL:::::VD::VE::::::::V::Q:F:::::::
HVO_B0355       :HGH::::E::::::S::F::Y:::::V:::LASSVET::::::AV::::D:Y::E::V:

consensus       TTRAEAYAAAG-FGRAKVTFQEPATDRDWCPNCGAAAEAIIERHQEEAFFLFGTPIITFE
#oth            1213...1332111132111.22.22212.21..33.21.12.21221112212123122
Hmu1433         :D::::::DL:L:DYTVLSY:TN::E:EF:H:::RD::T:VR::E:TVLSV::FS:-:LG
HQ1922A         :::K::::GHL:L::DT:::::::::::Y::::::N:S:::T:R::D::::TN::VYR:D
rrnB0068        ::ED:::S:VT::::::::Y:SV:E:E:::RG::E::D:::::Q:K::::IL::::::Y:
HVO_B0355       MS:S:::SN::::::R::::::::DGDE::::::KP:::::::::M:::::::W:LW:::

consensus       EGGN-SYECEHCSPNA-P--DAELSEEERREIFR
#oth            2211112..12.22211111132.122..11113
Hmu1433         :RTG::D::PE:T:HV::DE:V::T:A:::::::
HQ1922A         A:::::::::N::V::T::::IQ::::::KRVLG
rrnB0068        :::G::::::::AHS::::::TS:TP:::::::-
HVO_B0355       QST:PAR::::::::::I::H::::AS::::::D