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4 genomes BUD2209 6 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC0626

rrnAC1042

rrnAC1570

-

Hbo2428

Hmu2418

- - -

HQ3533A

Pairwise sequence scores
Consensus score4361 Hbo2428 rrnAC0626 rrnAC1042 HQ3533A rrnAC1570 Hmu2418
2309Hbo2428 4576 1841 1753 1805 1839 1814
2737rrnAC0626 1841 4372 2094 2161 2298 2218
2980rrnAC1042 1753 2094 4569 2372 2586 2538
3075HQ3533A 1805 2161 2372 4357 2639 2640
3450rrnAC1570 1839 2298 2586 2639 4420 3205
3392Hmu2418 1814 2218 2538 2640 3205 4452

647 symbols
consensus       -----------------SSEADSISRREKLAALRAVARYRPTLTGGIVALGLVAAVLEGV
#oth            1111111111112222443423331232.23112521313.4313412321232121.11
Hbo2428         ::::::::::::VSDER::::P:ATLG:::::::T:IS:D::RF::V:::S::V::F:::
rrnAC0626       :::::::::::::::::--M:ATP:VS::Y:S::R::L:::A:::S:::AS:FVML::::
rrnAC1042       MPQSVPTVPWMTTEQMTGRNS:T:::Q:::D::LYA:::A:KF:VM::G::::T::::::
HQ3533A         :::::::::::::::::M:SS::::LSR::T:::KI:E:::S::LF:ALFSVG::T::A:
rrnAC1570       :::::::::::::::MS::DPEPV::::::D:::D::::N::Y:AAV:V::V::::::::
Hmu2418         ::::::::::::::::MAD:P:NV:::D:IE:VI::::F::RF:V:VF:F:IT::LF::I

consensus       GLSFILPIVELVQ-TQDPAAQADGLLGIFVTVYQTLGIPFTLETVIGGVALVMVARYTSS
#oth            ..2.12.121231232333332313323.322.42212.1.222122.2241242.1232
Hbo2428         ::::L::L::AGR::SLTV:SDQTVVSW:AAA:GAV:V:::F::LL::A::ALGL:FGMA
rrnAC0626       ::::LF::LDAA:AG:SLPL::N:VT:R:LS::VAA:L:V:::FLLV:L:C:::I:F:A:
rrnAC1042       ::T::I::I::M::SSE:VT::::IA:::F:::::::::::I:Y:::::::ATCL:::::
HQ3533A         ::G:::::I:I:RS:G::T:N:T:A::V::S::EF:N:::::A::V:::MS:LTI::I::
rrnAC1570       ::::::::::::::L:::::EV::::AV::::::::::::::GY:VV::SA::I::::T:
Hmu2418         :::::::::::::::::S:SE:::::A::::L:R:A:V::::G:::L::SG::::::::N

consensus       FLVAWLRAALRTYYIRDLQDRAFRNALNARVEYYDEEGSDDILNAIVTQTNYAGRVIKRG
#oth            141411223.334.2.212232144113133413.32...211.111.114122311333
Hbo2428         TF:RY:Q:Q:VAD:::S:KTGV::GI:D:DLS:V::R:::EL::TL:::S::PAT:LSSV
rrnAC0626       :A:K::A:K:TQT:E:::K:::YEL:MG:S:A:::DK:::::M:T:L:::R::::::G:I
rrnAC1042       ::LT:::DV:QLS:E:HIRENL:DS::ETEM:FL:RK:::N:::::::ESKA:SK::::F
HQ3533A         :::S::Q:::::E:V:H::EI::TR::D::TQ::::::::::::::::::G:::QS:SGI
rrnAC1570       :S:::F:E:::::::::::T:::Q:::::::::F:K::::::::::::::::G::::DQ:
Hmu2418         :V:::::E:::::::::::::::::::::::D::::::::::::::::::Y:::::::::

consensus       IQFFEQLLLALVYLAIALAIAPVLTLAAAVLLGGITLGLRSVIESGYDVGDRVAAANEER
#oth            232422321342.332.2312.3.14323231.122343.422221132.241.3..243
Hbo2428         LSVV:RT::VFT::IL:::VD:L::T:V:A:::V::V:V:::VG:A:GA:SSI::::T:I
rrnAC0626       ::::Q:AI:C:::IG:::::::::AVG:::A:::V:AII:YG::P::A::::::T:::QL
rrnAC1042       VKL:DL:::TVA:::L:TW:S:Q::AF:IFII::VG::::HL:G::::L:::::::::RM
HQ3533A         :RVS:LV:MT:::AG::FF:S::::::T::::::::YL::::::P:AKL:ST::D:::K:
rrnAC1570       :K:TQ::F::G::F:V::V::::::IITG:V:::FSVFF:R:LD::::::EE::E:::L:
Hmu2418         :::L::TFM:S:::F::FVV::W:::F:VFV:::F::VF:Q:L:T:::::EQ::D::K::

consensus       QEAAQAGTQGIRDVRIFGLADELYDDFTDAIDRYTDARIALRRNEAAISNFYNLAVAVLV
#oth            .232...21....112.123222442142111511424142.1.2212432221311132
Hbo2428         :AH::::V:::::::L:::D:VAATRY:::L:D:I::VVG::V:Q:IV::LHRF:A::V:
rrnAC0626       ::TT::::::::::KL::MR:G:LAE:RSTL::::STSV:V:::QV::GSL:R:S:SL:L
rrnAC1042       :QVV:::MI::::I:V:N:ET:I::EYEE:LEE::RSKV:N:::R:::KKSQ::V:S::I
HQ3533A         :Q:::::::::::I:::::::::R:::IE:::TF:::Q:T:::::S:L:E::D:::::T:
rrnAC1570       ::::::::::::::::::::E::FE::::::EQF:ES::V::::::::N:::::V:::S:
Hmu2418         :::::::::::::::V::V:::::Q::Q::::K::Q:::L::::::::DK::::I:::S:

consensus       FVLIYVALTFAALSLGELGLFLFAMFRLGPKASSLNSLFYAIENNLPHLVRTQQFIDELE
#oth            121112.13223.12211.11.11.11.1.22.422244.531231....1.341334.2
Hbo2428         L:AV:L:::W::::::AV::L::::L::::GV:::Q:QL:GLDGK:::::E:LREL:::A
rrnAC0626       :G:V:::IS:R:::IA:::V:::::L::A:RL:::S:TI::::GE:::::::H::::R::
rrnAC1042       :A::::::::TN::F::::::::L::Q::::::GI:KR::KV:E:::::::::S:MRD::
HQ3533A         :G::F:::RV:N:::S:::V:::::::::::V:N:::AV:N:::KI:::::::D::NK:T
rrnAC1570       :::::L:::::S::I::::V::::::::::R::QV:T:Y:RT::::::::::I::T:::A
Hmu2418         :::::F::E::D:T::A:::::Y::::::::::RV:T:::QV::D::::::::E::HV::

consensus       AYAEPTGGSQEVPAEIEEVEFDDVSFSYNDSETVLREISFEVEKGEFVAFVGQSGAGKST
#oth            445124213432.3312321.22.3.3.414141143322423211.111..2..1....
Hbo2428         :ARAVR::DAD:::PV:S:A::G:::R:P:GDQGVSNV:LRA:R:::I:I::G:::::::
rrnAC0626       :QQ:::::-:S::DS:::IA:EN:::A:E:-:P::ADF:MA:DR::::GI::K::G::::
rrnAC1042       EWE::DT:E:PT:K:V:T::::::T:::T:D:V::::VD::LK:::::::::::::::::
HQ3533A         D::::AS::T:T::N:RTL::Q::T:G::S:::::D::::::HQN::I::::::::::::
rrnAC1570       T:N::::S:R:::E::R:I:::::H:::D:E:E:::G:D:T:::::::G:::::::::::
Hmu2418         QNK:DNS::K:A:E::NG:::E::W::::::::::QGMN:Q::::Q::G:::::::::::

consensus       IVSLLARLYEPDSGEIRANGTPIDEMDIDEWRDRLAVVRQDPFIFNDTLRYNLTAGNRDA
#oth            21..11.2.32.4.3121.13323332232..13212...2.21.2....2.11322112
Hbo2428         :::::::::A::T:T::V:::DLSTVRV:D::::::::::::Y::D::::N:VL:SAPE:
rrnAC0626       V::::T:::T:::::VL::::::SAYALE:::EAV:M:::::H:::::::::::::-::I
rrnAC1042       :::::::Y::::::Q:::::N::GQ:::S:::::ISI:::N:YM::::::H:::V:::::
HQ3533A         :A::I:::::::E:S:L::QREVT::::ES:::Q::::::Q::::S::::::::IA::::
rrnAC1570       :::::::::PV:K:::::::V:::::::V::::::SM:::::::::::::::::L:::EV
Hmu2418         L::::::M::I:R:T:K:::VS:::I:::D::EC:S::::N:::::::::::::I::::V

consensus       SEAELDRVCEIAKVDEFIDDLPDGYDTQLGDDGVRLSGGQKQRVALARALLADADVLILD
#oth            12332331122.3122.322.12.1113..11..1.....2....1...113..12112.
Hbo2428         ::SAFE:A:AD:G:TA:AEG:S:::::V::E::::::::::::::I:::::R::::VVF:
rrnAC0626       T:ET:YE:A:K:LIL::L::::Q:L::V::::::K:::::R:::::::::::::E::V::
rrnAC1042       TD::IK:A:::::::Q::T:::N:L:S::::::::::::::::::::::I:K:::L::::
HQ3533A         TR:D::H::::::::::F:E:::::E::::E::::::::::::::::::::::::I::::
rrnAC1570       ::T::::::A:::::::::E::::::SL::::::::::::Q::::::::::E::::::::
Hmu2418         ::S:::Q::S::R::::LE::::::::M:::E::::::::::::::::::IK:::L::M:

consensus       EATSDLDSNLEKQVQRAIEEMDRDYAIITIAHRLSTVKNADRIYTVEDGQITERGTHAEL
#oth            ....1..221.32124211422222321211.1.111411....1111.222.3.4.5..
Hbo2428         ::::N::ARM:ES:LGS:R:AT:NRVFVVVT:::GS:VD:::::::A::RMV:D:::E::
rrnAC0626       :::::::::::Q:IH:TV:TL:G:QTV:A::::::::S::::::::::::V::::S::::
rrnAC1042       ::::::::::::E::A:::A:E::::::A::::::::E:::::::M:::W:S:C:G:D::
HQ3533A         :::::::T:::A:::S:::Q::NE:M::::::::::IQ::::::A::::::::T:R:Q::
rrnAC1570       :::::::::::::::Q:::R::::::::::::Q::::::S:::::::E::V::T:Q:G::
Hmu2418         ::::::::D::::::::::::::N:::::::::::::::::::::::::R:::::::N::

consensus       VEADGKYAELYA------IQ-------SGG-----------------
#oth            2443.1..1..1111111312122222.2311111111111111111
Hbo2428         :A:E:T::S:::SMSGFELGDTDSTDN:::DGADHSDTESVAAADSD
rrnAC0626       LNDN:T::::::::::::M:GTAAAQS:S::::::::::::::::::
rrnAC1042       ::SE:::::::::::::::::::::::::::::::::::::::::::
HQ3533A         IT::::::::::::::::V::::::::::D:::::::::::::::::
rrnAC1570       :KKG:::::::G::::::::::::::::NT:::::::::::::::::
Hmu2418         ::T::::::::G:::::::::::::::::R:::::::::::::::::