4 genomes BUD2211 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0055 - Hbo3919 Hmu3366 - - - HQ2613A

Pairwise sequence scores
Consensus score	1934	Hbo3919	HQ2613A	Hmu3366	rrnB0055
1578	Hbo3919	2137	904	1526	901
1250	HQ2613A	904	1343	1154	1149
1832	Hmu3366	1526	1154	2143	1171
1224	rrnB0055	901	1149	1171	1326

280 symbols
consensus       MYREAVGR-----AET-EF--AG-VA-DITE-DPFTGDR-GHE-EIIG-KE-TDE-AYQW
#oth            111111112222211121122112112111121111111211121111211211121111
Hbo3919         ::::::::VIDRL:::N::YS::T::F::::D:::::::A:::S::::R::K:::S::::
HQ2613A         --------:::::---:--::--:--:----:-------:---:----:--:---:----
Hmu3366         ::::::::LLEEV:::E::FR::I::I::::A:::::::T:::D::::T::Q:::Y::::
rrnB0055        --------:::::---:--::--:--:----:-------:---:----:--:---:----

consensus       ATVQLVGNAVP-VLDARPVRKG--R-EIV-DLLDSAE--V-V--VLMDREFDSQHVLEMI
#oth            1111111111121111111111221211121111111221212211..1.1....2..11
Hbo3919         :::::::::::L::::::::::DT:L:::R:::::::EM:M:ED::::G:L:::::::E:
HQ2613A         -----------:----------::-:---:-------::-:-::--:::::::::L::::
Hmu3366         :::::::::::I::::::::::ES:K:::E:::::::DL:H:DN:::::::::::::::L
rrnB0055        -----------:----------::-:---:-------::-:-::--:::::::::I:::L

consensus       SQRGLSYVVPKRMQTSEKAQAKRLLQRDQDRYETDRKLHLGKNEWHETTLIYRRKENSEH
#oth            1111.1..1.1..1...111.11.12111..111.11...111.......3.....1...
Hbo3919         CSWR:Q:::::::R::::ET:RQ:CEH:I::QSV::G::::DD:::::::V:::::::::
HQ2613A         :::::::::::::::::R::::::::::::::::::::::D:::::::::::::::::::
Hmu3366         ::::::::A:Q::::::::::::::H:::::::::W::::::::::::::T:::::D:::
rrnB0055        :::::::::::::::::::::::::::G::::::::::::::::::::::L:::::D:::

consensus       DDHRQYSVFMTNRESGFLTEYGYRWEIESGYRSIKRFMAATTSKDFGLRFFYFAFACLLY
#oth            3.1......11.22222121.11........11.1.1.1....12.1.............
Hbo3919         T:Y:::::::::Y:TEAIGK::S::::::::K::::::::::::N:V:::::::::::::
HQ2613A         ::::::::::S::GG:::S:::::::::::::::E:::I::::T::::::::::::::::
Hmu3366         E:::::::::::::::Y::::::::::::::KN:::::::::::H:::::::::::::::
rrnB0055        G::::::::I::TS:A:::::R::::::::::::::L:::::::::::::::::::::::

consensus       SIWRAVDLLVQVELTGEYERSPIVTADNTLTLLKKETGIG
#oth            ....1....1.12.1...11112...111......1.1..
Hbo3919         ::::S:::::::::A:::D:P:V:::NSV::::::Q::::
HQ2613A         ::::::::::::K:::::::::M::::::::::::::R::
Hmu3366         :::::::::::AA::::::H::::::::::::::::::::
rrnB0055        :::::::::A:::::::::H:A::::::::::::::::::