4 genomes BUD2213 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2908 - Hbo1034 Hmu2682 - - - HQ2111A

Pairwise sequence scores
Consensus score	1049	HQ2111A	rrnAC2908	Hbo1034	Hmu2682
375	HQ2111A	1075	186	235	178
567	rrnAC2908	186	1116	399	370
741	Hbo1034	235	399	1079	478
657	Hmu2682	178	370	478	1124

160 symbols
consensus       --MDAVAVYDHVRADEAA-----VAAGVYRVVGTDD----ETVTLLRVADADARREHTGE
#oth            22233212211123221221222233.1..1..1231111121...1.211231.31...
HQ2111A         :::QVGEF:EY:GT:YPT:::::---:I::A::VKQQDSR:RI:::::SNDQHM:K::::
rrnAC2908       MADGS:::G::::PT::GR:DSR:P::::::::::E::::DA::::V:G::AG::V::::
Hbo1034         :::T:P:I:::Y:::D::::::::SD::::::::::::::::::::::::::R::SN:::
Hmu2682         VTP:G:::S:::SLS:P:AIEPDA:P::::::::GS::::::::::::::::::::::::

consensus       IVTIARDELDTFEQAENPDANRPVGARVASQLRALRWSLRTFVRSLAANPRRSALAGALL
#oth            12113222112.23122.132.22232231212323122221212113313321212231
HQ2111A         :IH:SDS:I:::T:TVE:NKE:F--RV:K:KA::MPYVAL:IF:R:RT:TFL:::SLGSV
rrnAC2908       :::V:CE::::::L::::::S:SLAT:IL:::AG:::::WL:W::IRSK:ISGTT:IT::
Hbo1034         ::::H::R::G:VS:::::G::::::A::::::MVY::V:A:::Q:::H:LPA:V:::FV
Hmu2682         VF:VD::D:TA::P:DD::D:::::Q:LRDG:DT:G:Q:::::G:::DS::::T::::V:

consensus       LVGAFGEDFANLPEAVLSVLILLGSLGLAYLG-SNRL---
#oth            11.32.23233221322112122.1121222121132111
HQ2111A         VA:-::A:S:::A-LIST:::::::V:I-FMSV::WYNHG
rrnAC2908       :::T:::GILPVS:T::T::V:::T:L:V:::RAGPA:::
Hbo1034         ::::L:DH:FQ::::A::AS:IV:::::::V:::G:::::
Hmu2682         :::LV::Q:VSA::G:F::AVFA:::S::A:::::L::::