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4 genomes BUD2222 6 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC3082

-

Hbo3037

-

Hut1538

Hut2643

- -

HQ1088A

HQ2434A

Pairwise sequence scores
Consensus score1378 Hut1538 Hbo3037 HQ1088A HQ2434A rrnAC3082 Hut2643
793Hut1538 1583 805 859 309 275 334
829Hbo3037 805 1527 986 314 301 386
837HQ1088A 859 986 1577 336 312 393
672HQ2434A 309 314 336 1296 710 672
731rrnAC3082 275 301 312 710 1342 799
837Hut2643 334 386 393 672 799 1331

205 symbols
consensus       -------------------MDPPSDAYALFECTTCGN--LSLGRGDGEISCCDEPMEAIE
#oth            1123323322333233322333423525222.43.2232113132.3322.1211.2532
Hut1538         MSHENSEEAPAFRSETATDG:ITDRP::IYR::D:R:VV::MQDC::GMT:H:::::RVT
Hbo3037         :::MSEQKSWSAEDTEEVQY:LS:GR:G::::A::D:IV::F::::KP:::HG:::QQKT
HQ1088A         MSNTPSDHSPHDTDKQDVQY::DD:S:NILQ::Q:DTTA::V::D:PP:::H:::::H:N
HQ2434A         :::::::::::::::::::---M:NDVTT:::SH:::::--::I:::::R::E:T::V::
rrnAC3082       ::::::::::::::::::::T::A:ETR::::V:::G::--V:I::NRPT::G:::A:T:
Hut2643         ::::::::::::::::::::S:::::T-::::E::::::--::F:::::::::G::QPV:

consensus       DAAMSVEEPDLRELLKQVFDLPKTELDICLCVIEGGPLSVAELAEQLGYDRSTVARHLNH
#oth            35534223.21321.3311111221.11..1.112.2112231.2332..1122311.12
Hut1538         E:::DI:P:::::V:LDA:G:::AG::::::::GE::::P::V:A::D::E::IRSY::E
Hbo3037         :CE:NIKS::I:QV:F:A:G:::AG:::::Y::GD::::AS:V::T:::::::MT:Y::K
HQ1088A         QVN:T:KP::I::V:F:::G:::SG::::::::GE::::AS:V:TK:D:::T::T:Y::K
HQ2434A         :DPI:-ST:T:S::::S:L:MSE:::EL::::M:::SVT::T::::TE::::LIN:::::
rrnAC3082       TGDTA:S::S:ET:::T:::MSG:::::::::M:::E:T::A::::I:::::V:::::::
Hut2643         EEQV:::::S:D:::RT:::MSE:::::::::M:::E:T:PD:::DV:::::V:::::D:

consensus       LVDLGLLRKSRRNREEGGQVYVYHPVDLDVMRRRLLTGFYAWAGEAAALIEEANREKVEY
#oth            .132.12423212124..51221112221411321242.35.233.1111242221.212
Hut1538         :::::::QQ:QL:::G::F:S:F:S::::E:::ET:::::::::::::::::::LT:A::
Hbo3037         ::::::::R:EL:::D::V:NM::S::::R:::QT:L:::V:::::::::::::LT:QD:
HQ1088A         ::::::::R:EL:::N::IIN:::S:::EQ::LET:::::L::::::T:::N::MT:Q::
HQ2434A         :ASI:VVK:Q::LLDS::E::I:T::SPETV:VQ:RRE:HQ:TAM:T:QLNALQ:::::S
rrnAC3082       :AAF:VVE:R::I:P:::H::::T:QPPE:V:E::REE:LS:VRL:T:QLDDLQ:::::A
Hut2643         ::E::VID:H::LL:::::I:::T:N:A::VT:::TGA:AN:VQD:T:::DSIS:::::A

consensus       I-ADPDTDLPD-FWESFQ-----DQ
#oth            3332324322321.33241111144
Hut1538         VD::HEES:DAI:::E:DGARAD::
Hbo3037         LERN::KE:::V::D:LS::::::D
HQ1088A         LAEN::Q::::V:::::P:::::HK
HQ2434A         ::::::DGE:T:-::V:Y:::::SE
rrnAC3082       ::::AK::ERQ:-:TV:::::::E:
Hut2643         M:VEV:::T:Q:-:KIY::::::K-