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4 genomes BUD2227 6 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

pNG7082

rrnAC0858

- -

Hmu1104

Hut1225

- -

HQ2690A

HQ3203A

Pairwise sequence scores
Consensus score3454 pNG7082 rrnAC0858 HQ3203A Hmu1104 Hut1225 HQ2690A
1938pNG7082 3531 1511 1349 894 1136 1040
2145rrnAC0858 1511 3522 1902 939 1126 1147
1858HQ3203A 1349 1902 3540 750 972 934
1652Hmu1104 894 939 750 3615 1396 1213
2066Hut1225 1136 1126 972 1396 3782 1993
1924HQ2690A 1040 1147 934 1213 1993 3690

521 symbols
consensus       -MARPNVLLVILDSVRARNTSLLGYRRETTPFLDEFAREATTYTQARSPSAWSLPSHTSL
#oth            125431212.11.11..212133.2323....132.241.13.2...222331121.2.2
pNG7082         ::G:::::::V::C:::A::::::H::K:::::E::G::::V:::::TTAS::::A::::
rrnAC0858       ::S:H:::::VA::L:::S::V::::::::::::A::E:::V::::::::N:TV:::V:M
HQ3203A         MSTT::::V::A::L::KSV:A::G::::::::SA:ST::::::::::H:N:T::::A::
Hmu1104         :--------:::::::::::G:H::GDR::::::S::G::EW:R:::A::IH:VA::A::
Hut1225         :::D:::::::::::::::C:VY:HYN::::::A:::::::R:E:::::G:R:VT::::I
HQ2690A         :-MSS:I::::::::::::V:FG::AND::::CS:::DR::::::::::G:K::T::::I

consensus       FTGLHVEQHNVTDADARLDPGQTIFERLAEEGYETGLFSDNPFLTDHNSGLADGFDTVVG
#oth            .1.33233133142351.224411123.3431.4.11.13.332122521.324.31221
pNG7082         :::VPS:G:KL-QITE::Q::::::DF:DG::::::V:TE::Y::V:P:::S:S:E:::T
rrnAC0858       :::HETHE:G:-:HT::::A:H::::E:::A::D:::::::::::::E:::D:V:Q:A::
HQ3203A         :::SSTAAAQF-:I:T::A:H:::::E::AD::Q:S::T:::::I::QT::DNA:T:A::
Hmu1104         :S::::D::G::KHESQ:::DA:VWSD:S:R:::::::TP:VVV:E-S:N::EP::::D:
Hut1225         :S:::::E::::A:KY::::SRSV:D::RR:::S::V::A:NWI::VDV::::::EH:::
HQ2690A         ::::S:::::I:S::D:::SRFS:::::RS:N:T::V::E:TW:::V:V::K:::::IE:

consensus       PR-------FPDALDPKD----EGNGQNGDWL-----------S--NGLW----------
#oth            31232111111234234221222242321332233322232321331.132122322232
pNG7082         E::::::::-::ST:VD:::::PSETR::V--:::::::::::-::D:F:::::::::::
rrnAC0858       S-:::::::-:EQY:SAY:::::T::SL:::P:::::::::::-::::F:::::::::::
HQ3203A         S-:::::::-:ETF:T:Y:::::T::SL:::P:::::::::::-::::F:::::::::::
Hmu1104         ::RDPKHRY:E:::S:T:V:::::HQT:VEY:RRCVASGKPLR:AF:::YF:ISSNKDAY
Hut1225         A:NAM:::::::::N:ESFVSHH:K::Y:AF:RAALTSGMPFR:LA:::STKLSTDYPTL
HQ2690A         ::NLP::::::A:V:::SFVAE::R::YVEY:KKSFTESSSAQ:IL:::ATKLAWDYPWL

consensus       -P-----------YADRFLEWSDEQSEPWAACLNLMDAHRPYEPDEEYDEWGDERLREIQ
#oth            3122222222233.114213.4321332....2.1..1.3..114412141132343431
pNG7082         :-:::::::::::::::LT::I:::T:S:::::::::::M::ATRDA:::::ADFYWAMH
rrnAC0858       :-:::::::::::::::T:::V:DRESE::::I::::T::::::LA:::::S:::S::L:
HQ3203A         :-::::::::::::::QL:S::AD:TT::::::::::T::::::QPA::I:S:::I:Q::
Hmu1104         D:E::::QEAGTE:VES::Q::::RDG:::::::F::::F::::VR:FRSA:T:E:LDVH
Hut1225         V:EFMKASTPART:V:A::::HQ:::::::::V::::::I:::::::H:L::G:::QTLH
HQ2690A         L:DSLQVSTAADI:::L::D:ERK::G:::::I:F::::I:::::::F:R::GSDA::::

consensus       DSLGDKW-WEFLAGNLPWGKARALEALYDGAIRQADAILERLIGALRERGVLDDTLVVIT
#oth            222433221433223422134322.41.1111113.132222143.221.2.11.12121
pNG7082         :E:PI::E:SVYGEQ::A:VGQL::P::::::::T:::::QV::::EA::::::::::::
rrnAC0858       E:M:F::H::::S:::SL:F:SI::QI::::V::::::F:T::RG:D:Q:::E:::::FV
HQ3203A         SEM:F::H::L:S::VSL:F:KL::TI:Y::V::V:::F:Q:VET::D::T::N::IIF:
Hmu1104         :::SSPI:SKDV:ASGE:W:L::I:::::DC:::::DAVAT:VD::::::::::::L:V:
Hut1225         ::FD:HK::D:S::RR::WQK::V:::::::::EM::E:R::::K::D::A:::::L:::
HQ2690A         :G:R:LK::V::G:QE::W:R::::G::::::A:M::Q:R:IVNT:D::::::::F::::

consensus       SDHGEGFGEPSAIRPEPRAAEHGIGTHDVLTHVPLLVRAP---------GQTDGRRIDSL
#oth            1...11..1323344331223.232221423....2.25.11111111112321542321
pNG7082         ::::D:::::PQAAT::P:VM::M::QEE:F::::V::G:::::::::::::G::::E::
rrnAC0858       G:::::::::T::PE::P:VS:R:::::SMY::::V:::::::::::::::RE:H::TD:
HQ3203A         :::::A::AET:LSN::P:IS:R::::EL:Y::::F::L:RATNTSASTAS:G:TV:SD:
Hmu1104         ::::D::::W:RVD:RV:::Y:SWSV:E::::::::::R:::::::::::GE::GAN:::
Hut1225         :::::::::::DL::GI:I::::V:I::::L::::::SF::::::::::::S::VSV::P
HQ2690A         :::::::::Y:D::S-T:V::::VAID:AI:::::::KY:::::::::::::ESETVTEP

consensus       ATLTRFPRAVRAVVDGEA----DP--AFA-PDGPVVASQAPLNGALQERAARYCDDADPF
#oth            .2.231.32222343223121132423122221423122322543243313333222412
pNG7082         :::AQ::D::L:AF:::::::::DSGW:VA:::QTT:Y:::PT:QTA:Y:EQ:T:EP:R:
rrnAC0858       :::S:::D::::MAL:DGNAD:G::::::S:N:T:::::::IGP:MR:E:E:V:G::V::
HQ3203A         :E:AGI::LI:S::ADNNNSDI::QR:ICAK::VT::T:L:IPAGM:RE:::I:ET:::Y
Hmu1104         :S:::::AV:E:TL:::T::::E-::S:::V:DRAF::THR:ERPTVM-LPDA:E:PERY
Hut1225         :S::E:::V:EQ:R:S:G::::S:D:::C::::::I::AVG:DQP:::::SE:V::LS:W
HQ2690A         :::::::E:T::::ED::::::G:E:I:V::E::::V:AVG:::::KT:::D:I::LK::

consensus       AKTARAVYEDRDDD-TVRKRAAWGDDSAEIVVRGAQ-ESYDVGDIDAPV---VADSF--D
#oth            344222224342131313.43322342324413243132442343134322314423212
pNG7082         RQS:SL::R:GPG::::Y::::::::EY:A::::RRS::S:DTP::R:PSDV::::A::E
rrnAC0858       ::H::L::H::PG::E:::::::::SAH:S:IK:CG:GTVEDR::::A:::::RNH:DS:
HQ3203A         T:R:DII:SQ:S:G::IL:Q:R::E:AY:TLIT:QF::RE:M:Q::::T::::I:AVAS:
Hmu1104         :GPW:::::QD::G:-:Y:YGTHDSA::T:R::D:::V::R:A:D:GG::::::Q:Y::G
Hut1225         LS:S::AF:EIS:QCA:::ACVDR:R::T:H::N:::T:FP::N-:GDGRDG:DAA:::E
HQ2690A         TA:::::VTLE:GR:-IF:DIT:RNQ:RRME:IDS::T::T::APPKS:RSKIKE:::::

consensus       HIEDADVRDEGDGYDEFAD-----F---DLEDRLEALGYI-
#oth            453434243543132343133333123142431.13...41
pNG7082         :S:TLEITQLAA:E::M:EYDIDG:EDI::QS:::R:::L:
rrnAC0858       RYA:VAIATPL:::T::E:ASDTQ:AG:::D::::::::K:
HQ3203A         :KTSEISINSI:E:::::EQYSNE:AE:E:::Q::::::R:
Hmu1104         EL:G:::S:--GES:SLE::::::-:::SV::Q::S::::R
Hut1225         G:S::G:::::G:V:DIG::::::-:::GTYQ:::D:::V:
HQ2690A         DM:NL:::TK:S:VEGAS::::::-:::ATRK::KD:::::