4 genomes BUD2240 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0241 HVO_2389 - - - hla0769 - HQ1755A

Pairwise sequence scores
Consensus score	1767	HVO_2389	rrnAC0241	hla0769	HQ1755A
1422	HVO_2389	1810	1203	1245	1247
1433	rrnAC0241	1203	1828	1264	1165
1538	hla0769	1245	1264	1730	1288
1416	HQ1755A	1247	1165	1288	1763

243 symbols
consensus       --------PMPFDPDRVQTVTFDSYSTLVDVEAAEKALAERVDDPEPVSRLWRSRSLAYT
#oth            111111221121.....2.1.......1...1..12..12..21.2.1.1.......1..
HVO_2389        ::::::::-:S::::::S:::::::::::::D:::::::::::::::::K:::::::E::
rrnAC0241       MRHPVLRV:::::::::T:I:::::::I::::::Q::::D:::::Q::::::::::::::
hla0769         ::::::::-::L:::::::::::::::::::::::A::::::P:::::::::::::::::
HQ1755A         ::::::MM:AD::::::::::::::::::::::::Q::NR::EN:R:I::::::::::::

consensus       FVANQIDAYQPFYEMNRDALQYALDAHDVDLSSSERDEILAVYHELDVFDDVRDGIERLR
#oth            .21.21.2.2....1..1..1..12..2.22122...1..1.....1......12221.2
HVO_2389        ::G:HV:E:E::::V::A::::::E::::SV:A::::A::S:::::::::::::AVG:::
rrnAC0241       :L:::::::K:::::::::::::V:::G::ITTE:::::::::::::::::::::MNK:Y
hla0769         ::::A:::::::::::::::T:::A::N:::::A::::::::::::E::::::S::::::
HQ1755A         :I:::::T:::::::::::::::::::::A::::::::::::::::::::::::S::::D

consensus       DAGYDCYVLSNGNPEMLDSMVEHAGIGDLIAGTISADEVQTFKPAAELYRHAAARTGTPI
#oth            21..12..1........11..1111.11112111..1.132...1..1...1.1..1.1.
HVO_2389        ::::::::V::::::::::::D::D:R::LD:VV:::::GV:::D::I::::::::::::
rrnAC0241       :::::L::V:::::::::::::F::::G:LED:V::::I::::::::::::::E::A:N:
hla0769         EG::EP:::::::::::::::::::::::::::::::::E:::::::::::G::::::::
HQ1755A         A::::::::::::::::ST::::T::::I:::V:::A::SA::::::::::G::::::::

consensus       DEIAHVTAGWFDVLGAQHAGMQAVWVNRKATPWDPFAGDPDLTVESLHDLADALAG----
#oth            11.1.2...1..13..3...1.1.1.1.132.111.113.21.1222131311.331111
HVO_2389        :::::A:::::::M::::::::G:::D:::S:::::GPE:N:::PD:TT:VE::::GGPS
rrnAC0241       E::::::::Y:::Y::M:::::G:::::DDG:::A:::Q::::IG:F:::H:E:T-::::
hla0769         :::V::::::::::::S:::::::R:D::G:::E:::::::M::::I:E:::::GV::::
HQ1755A         :A:::I::::::IV::V:::T::::::::E::SE::GPG:H::::T:TGVC:::NI::::

consensus       ---
#oth            111
HVO_2389        AAD
rrnAC0241       :::
hla0769         :::
HQ1755A         :::