4 genomes BUD2242 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0160 HVO_A0052 - - - hla2138 - HQ2162A

Pairwise sequence scores
Consensus score	689	rrnB0160	HQ2162A	HVO_A0052	hla2138
252	rrnB0160	660	222	241	206
549	HQ2162A	222	675	493	501
609	HVO_A0052	241	493	680	544
596	hla2138	206	501	544	699

96 symbols
consensus       MSDETQQPRRNAESTDNRARQAPTEYVERSDVGVSLTVKLKRGTGTRDQDKITAKVKGKT
#oth            ..1321122332112323112321.1...1.1.1.111111.......1.2311.2.11.
rrnB0160        ::E:SD--------:EPD:APDSV:K:::T:F:C:MEARM::::::::E:SM:I:S::E:
HQ2162A         :::SK:::S:VV::SSSEE:TKR:::::::::::::::::::::::::::EVI::A::::
HVO_A0052       ::EP:::S:T:::::::S:::T::::::::::::::::::T::::::::::L:::::A::
hla2138         :::H:::::KS:::PQ::E:::::::::::::::::::::T:::::::::::::::::::

consensus       LEDAREDMETLRE-YIHDLAEDARQIQPGEDDE---
#oth            1.11111111.111.11111112.11..21121111
rrnB0160        A:ETIAEFYK:L:E:DQEISGRL:DV::E::EAGED
HQ2162A         ::::::::::::G:::::::::::::::::::::::
HVO_A0052       ::E:::::::::::::::::::::::::::::::::
hla2138         ::::::::::::::::::::::T:::::ADPH::::