4 genomes BUD2270 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2789 - - Hmu3147 - hla0639 - HQ2054A

Pairwise sequence scores
Consensus score	4138	hla0639	HQ2054A	rrnAC2789	Hmu3147
2518	hla0639	4531	870	1643	1499
1264	HQ2054A	870	2143	962	884
2766	rrnAC2789	1643	962	4214	1853
2679	Hmu3147	1499	884	1853	4628

642 symbols
consensus       ---NLAGSWLAAGSLASGAGSLGLLWALWEHRDKPGARWFLATIACQALWCFSYGAALLV
#oth            11232332.213111.1.2121312231221131..121.232212112.11..132...
hla0639         MLSD:VPA:PVI::::G:::AV::A::IR:::GR::VD:::GVF:A::T::::::IG:::
HQ2054A         :::-MTV::::::A::::IA:VIF:RY:::Y:S:::::F:IV::::E:::S::::T::::
rrnAC2789       ::M::DLP:::L::F:::F:::Y::AQ:QA:W::::::::V:::VT:TV:::::::::::
Hmu3147         :::MI::::IVVA:::::::T:L:I:R::RY:E::::T:::LSLV:::::SV::AVS:::

consensus       FDPTIRLALEALGWLGIAWIGVCFLAFALEYTGRDNVVRSRWYRAVVALPLVATVLLVTN
#oth            1.111.22..333.212321123..2...2....331112212221231222312121..
hla0639         T:::L:AV:::MT::::V:A:IT::G::::::::SD:::G:LFGS::GFG:LS:::::::
HQ2054A         :::L::EI::IPV:I:VNF:::S:::::::::::GSL:::::MA:::::QTIH:GII:::
rrnAC2789       ::::L:::::MVS::::I:::F:::S:::G::::T::LE:G:::G:AV::::E:A:V:::
Hmu3147         ::E:::::::V:::ALL:G:A:Y::::::A:::::H::ETP::::LLT::A::V:::G::

consensus       PLHGAVWDGFSVEPAAGAAGVAYAHGPWALLVVTGAVLIVAAASLLLFDTVVSYGPLYRR
#oth            12.132.321221121.3.123.2321123222213223223121111..22...1...1
hla0639         S::::F:T::EF:::F:V:T:S::F::::Y:::AVETVL::S:VF::V::LL::::::::
HQ2054A         :I::IA:SEY:I::LF:::T:T:T::::LFVN:::V:IMI::::FV::::FF:::::::T
rrnAC2789       :::TV::Q::R:V::::S::AD::VL:VG::TIIV:M:F:SFGT::V:::::::::::::
Hmu3147         :W::L:::D:::VAV::L::T::ELEL::VA:A::G:::ALLG::V:::::::::R::::

consensus       EAAAVALSPVPPGAAVLLWAGGIGPVPALNLAPLLFLPHIALDAYAFVRSDMFEFHPATR
#oth            112..12.221.13.211.1321.11131111222.21.311.2...2221..122.1.1
hla0639         :S::::::SL:::F:LVA::LE:::::Q:Q::AMM:V::ML::::::N:AE::DRN:T:S
HQ2054A         Q:::::I:::L::V:F:::LFQ::GFWRV::T::T:PI:L:F:V:::FSRE:::IT::::
rrnAC2789       ::L::G:::I::::::::::::::::::V::T:::::::V:::L::::H:::::::::::
Hmu3147         ::I::GV:T:::LS::V::LY:V::::E::F:TV::::::::::::::::::::::::::

consensus       RAGERAAIDDLATPVVIVDEDARVVRLNAAAEAILAVDKARALTEPLAAFLA--------
#oth            .11..1..2.11211222112312.3..21.133.3122331122.13312311111111
hla0639         ::A::T::::::D:I:ALAP:RH:::::P:::SL:G::AET:RDR::DE:M:VPGLDDDR
HQ2054A         :::::::::::G:A:L:I:::::L:D::VE:QR::EIADKPT:GH:------::::::::
rrnAC2789       ::::::::H:I::::A::::QG:::N::::::QM:::::HE::::::ND::G::::::::
Hmu3147         :E::::::E::GN:::V:::HD:I:T:::::::V:S:E:::::::::::::T::::::::

consensus       ------GDDIADDGTRDRVAIEAGARRRTYAVATTPLTD-NGTRLGYTIVFQDITEEIRR
#oth            111111232323222332232232322121323222122231232121212212122221
hla0639         AAAEPD:G:SH:::::ETI:VDD::A::::::S:S::::P:::HV::::::S:V::RE::
HQ2054A         ::::::---------------------------------:--------------------
rrnAC2789       :::::::::::T::GSS::S:::DG:H:E:K:QQ:A:R:ET::Q::::V::::::D::::
Hmu3147         ::::::DETF:GPD:T:::T::T:N:::::SL::::::G:S:D:::S:::L:::::::E:

consensus       EQRLEVLNRILRHNLRNDAGVVRGRAEALANAL-DAEHARLADTIERRAGALVDLGEKAR
#oth            222121111321112112331232331323332213233332222133223122212112
hla0639         R:Q:::::::::::::::::::H:YG:I:R:R:E:P:LV:M::A::::::::AA:::::G
HQ2054A         ---------------------------------:--------------------------
rrnAC2789       :R:::::::F::::V::ESV:IQA:S:L::TE:::GD::DY:A:::QSV:R:::S:Q:::
Hmu3147         ::::Q::::VV:::::::MT::::F:::ANE:TD:::VSE:L::V:GK:DD:::::::::

consensus       TIERAGGADAAAAPVVLAALAAAAVDAA--DADASVAVNAPD-D-ALTIRADALRALCEN
#oth            232333233333332223322333223322231322323321122332333231232332
hla0639         :V::LV:DSD:S:VA:DEIV:S:IA::HER:P::::ES:PV:G:WTTRV:V:::::IV::
HQ2054A         ----------------------------::------------:-:---------------
rrnAC2789       :LAE::AGG:TPE:::::D::TEV:ET:RDEY:G::T:EI::::LR::TQPAL:KI:LT:
Hmu3147         A::GIL:::RR:TT:E:S::L:D:::EV:::::VPI::D::::T::V::D::T::V::VA

consensus       LVENALDH----------------G--SPDAPLRRDAKERGDD--D--------------
#oth            211112311111112222222222122322333323222313322121111111111111
hla0639         T:::::::::::::HDGEGSERDD:GPWVRVS:::EG::::EGEG:A:::::::::::::
HQ2054A         --------::::::::::::::::-::----------------::-::::::::::::::
rrnAC2789       ::::::Q:::::::::::::::::-::V:::VVTVG::VK:::::-::::::::::::::
Hmu3147         :::::VE:GSTSPESETPRDAVEH:PT:::S:TP:::V:H:PTSP:SPTRQDAVEHGSTS

consensus       -------------------------IVLTVADDGPGIPDHELDVLEAGRETDLEHGSGLG
#oth            111111111111111111112222232221311111212112322231211212122121
hla0639         ::::::::::::::::::::IDNSRF::::E::::::::::IEAV:S::::A::::::::
HQ2054A         :::::::::::::::::::::::::-----------------------------------
rrnAC2789       :::::::::::::::::::::::::V::::S:::::V:E:::G:::R::::::N::::I:
Hmu3147         QDGRYPDGTDATAPVRVTATAHDGG:EIA::::::::::::::::A::E::::::ST:::

consensus       LWLVRWAAAALGGDLDFADRD--GTTVTVRLPRERAA-----
#oth            112231323322212122332111122223213233322221
hla0639         ::V:E:G:::I:A:V:Y:::EPR::R:::SI:IVGET:::::
HQ2054A         ---------------------::--------------:::::
rrnAC2789       ::::::T:TT:E:::::DTS:::::::::::::::T:AEAR:
Hmu3147         :::AS::TRR::::::::VD::::::ARLW::V:E:REQSAA