4 genomes BUD2277 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0420 - - - Hut2678 hla2254 - HQ2987A

Pairwise sequence scores
Consensus score	2121	hla2254	HQ2987A	rrnAC0420	Hut2678
1482	hla2254	2139	1192	1205	1181
1539	HQ2987A	1192	2166	1231	1178
1673	rrnAC0420	1205	1231	2119	1356
1579	Hut2678	1181	1178	1356	2175

289 symbols
consensus       MSDSAD--DILDLLDLTEYEATALEQLLELGRTTAPNLAEATGIPKARIYGVLDSLSDEG
#oth            .2.233121322222.1...22..22.13...1...2.1..1...1..1.1..12..22.
hla2254         ::::G::::F:S:::::::::A:::E::L:::::::D::::::::::::::::::::EG:
HQ2987A         :N::HQPSEL::AFE:::::EQ::QS:I::::S:::S:S:::::::::V:::::D:::::
rrnAC0420       :::P:-:::VF::VG:::::::::::::S::::::::::::S::::::V::::E::::R:
Hut2678         :T:DTE:GE:QET:::R:::S:::T:::T::::::::::::::::R::::D::ET::N::

consensus       FIKIIPGRPKEYQPKDPSEILDRAVENRRQSYESFREDIDSIREAFVAEYAPVYERARDD
#oth            11.2......1.1113.221111.11.111211112222123113.12223.221.1311
hla2254         YV::::::::R:::H:::::AE:::A:::HA::R::::VEAVE:S::DA:T::RD:GV::
HQ2987A         ::::::::::::ET:P:A:L::Q:I::E::E:A::KKQ:ED:E:E::ETL::I:::G::E
rrnAC0420       :::L:::::::::::S::D:::::::::K::::::AA:M::Y:D::L:::E:RF:::NE:
Hut2678         YV:E::::::::E::H:ET::::::::::::F::A::E:::F::R::::FG::::::SE:

consensus       ISPTEDLFHVVDVGEPSERETRRLYRNADECVAVITKSFAYFDAVRPALADALDRGVEIR
#oth            211.11............1...11123.21323.1.1..2.2.2.11.332121211212
hla2254         L:::::::::::::::::::::::F:E:E:S:Y:L::::G:I::::::MR::IEH::DVD
HQ2987A         ::T::E::::::::::::::::SI::::TN::H::::::E:::::E::VT:::E::C:::
rrnAC0420       ::::AE:::::::::::::::::::DD:::TLR:::N::::L:N:ER:::ET::::::VN
Hut2678         VT::::::::::::::::T::::::GS:::EI:::::::::::G::::FET:Y:NN:P::

consensus       VLLLDPDHLSEENAAVQADIRDRLNAEYPAIELRFSAKRLPWRGTIVDPSLDYDSGEAIL
#oth            1.1.2.12.2221322.222233.3121.2122.1.323......31...12.11.2121
hla2254         A:::A:E::::K:KRR:DE::GL:G::F:SVSV:I:DRV::::::FI::::E::::QGL:
HQ2987A         ::F:::EL:E:S:Q:H:QRM:QH::SS:::::Y::::::::::::V:::::S::::A:V:
rrnAC0420       ::F:H::A:PP:K:::::::V:::T::::::D::::TEK::::::L::::M:::::::::
Hut2678         ::::::::::A::RG::::VIET:Q:D::D::::::E:S:::::::::::M::ET::::M

consensus       LVEEEDIPNHMRQAAITDNGSFVAGLERYFDLIWEYDSRDRSN------
#oth            1..1211.112....1.1.2.....131..1.2.211113323221111
hla2254         M::Q:E::::H::::V:E:P::::::WQ::::L:RHE::SGTQ::::::
HQ2987A         ::::::::L:N::::::::A::::::::::::::Q::TV:DRPNP::::
rrnAC0420       ::::P:V::::::::::::::::::MK:::::V:::E:VQ:::::::::
Hut2678         ::::K:::LS:::::V:E::::::::G:::E::::::::PV:DETDGSI