4 genomes BUD2279 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3243 - - - Hut1809 hla2257 - HQ2986A

Pairwise sequence scores
Consensus score	2499	HQ2986A	Hut1809	rrnAC3243	hla2257
1951	HQ2986A	2484	1646	1679	1684
2019	Hut1809	1646	2529	1700	1734
2045	rrnAC3243	1679	1700	2528	1779
2073	hla2257	1684	1734	1779	2594

346 symbols
consensus       --------ESETEQTNEP------LHIAVTGAAGYIGSRVIRELQAAHPDWEITAIDNFY
#oth            111111222221122312111111121.1..1..1.....2321.3...1.111....1.
HQ2986A         ::::::::-MT:::S:S-::::::::V:::::::::::::V:L::N:::E:AL:::::::
Hut1809         ::::::MT:NDSFDPD:::::::::S::::::::F:::::LDR::::::E::L:::::::
rrnAC3243       ::::::::M::::P:S:Q::::::P:::I::G:::::::::Y:::Q::::::::::::::
hla2257         MTDQESDI:::::::T::NGDGSTPT:::::::::::::::V:F:E:::::::V::::Q:

consensus       LGDVRSVGDVDIEHVDIRNRDRLEDALDGADIVMHLAAVSGVDDCEENADLAYEVNVTGT
#oth            1.3.221.11212...1.1.11.11..2.1.1.2....1......1211.....1..2..
HQ2986A         :::::GI:ET:VV:::V:::SA:::::T:S:::L::::::::::::T:::::::::::::
Hut1809         ::K::E::::T:::::V:K::::A:::::S:::::::::::::::GD:::::::T::V::
rrnAC3243       ::T:Q:::::::::::::::::::A::::::V:::::::::::::::KQ::::::::Q::
hla2257         R:Q:D:::E:E:Q::::::::::::::A:::V:C::::I:::::::::::::::::::::

consensus       NNVAWFCRKTGAALAFPFSMAVLGDPQSFPITVDQPRDPLNWYGRTKLLGERAIETFADG
#oth            3.......1.....2.......1...11...11121...1.......111.121111.11
HQ2986A         T:::::::::::::::::::::::::E::::S::DG:::M::::::::I:::LV:E::AD
Hut1809         H:::::::Q:::::V::::::::::::::::::E:::::M:::::::V:::Q::Q:Y:::
rrnAC3243       D:::::::::::::I:::::::I::::E::::::H::::::::::::::N::DV::Y:::
hla2257         ::::::::::::::::::::::::::::::::A:::::::::::::::::::::::::::

consensus       AFPAHLFLKSNLYGEHEIDGQTVSKGTVINFFVNRALAGETLTVYEPGTQARNFIHVKDV
#oth            1....1.11.....1.211122...1......11.211111.........1..11..1..
HQ2986A         T:::::::::::::::T::::R:::::::::::::VFDEKP:::::::::S::Y:::D::
Hut1809         ::::::::::::::S::VGDRV::::::::::LG:LFD:::::::::::::::Y::::::
rrnAC3243       :::::Q:MI:::::S:::::::::::::::::::::::::::::::::::S:::::::::
hla2257         ::::::::::::::::VV::T::::P::::::::::::::::::::::::::::V:::::

consensus       ARAYVRSAERLLEQLARGETGVEKYEIASDEDPSVMTVAEQVREIAAEEADIDADVELVE
#oth            ..1..1.1...2...221...2.21....2..11111..131122.312322.1..2...
HQ2986A         :::::::::::Q:::N:D:::I:::::::K:::GI:::::T::QS:Q::I:T:V::T:::
Hut1809         :::::::::::E::::A::::::R:::::::::::::::::IQ:::G:-YGL::::D:::
rrnAC3243       :::::D:C:::::::D:::::::::::::::::::H:::KL::D:::DI:::::::::::
hla2257         ::V:::::::::::::S::::T:TF::::E::M:::E:::I:::V:H::RE::V::::::

consensus       NPRGGDETLVDEFGVDISAAREALGWEPRHSVEESIRRLLDRKND-
#oth            ...221..1.22.2..1121313.1.2131211121.32.332212
HQ2986A         :::::-:::::R:E::::K:::Q:N:::Q:T::S::::::QT::TE
Hut1809         :::A::::::S:::::T:::H:T::::V:::I::TV:ER:::QP::
rrnAC3243       ::::D::::::S:T::TGRTTA::::T:E:D::SA::TA:ESA:T:
hla2257         :::SA-::M:E:::::::::G:R:::A:SE::N::V:H::TP:S:S