4 genomes BUD2280 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3246 - - - Hut1811 hla2255 - HQ2984A

Pairwise sequence scores
Consensus score	2989	hla2255	HQ2984A	rrnAC3246	Hut1811
2126	hla2255	2918	1875	2004	1968
2509	HQ2984A	1875	3026	2270	2361
2669	rrnAC3246	2004	2270	2992	2477
2702	Hut1811	1968	2361	2477	3004

396 symbols
consensus       MTILVTGGDGYLGWPTALRIADRTDDRVLLVDNFARREWVEEVGSVSATPIASIDERLDA
#oth            .1112..1..12...11..1.211.1.121...1...2..211.11.11112.211.22.
hla2255         ::V:L::A:::::::::::L:::L:E:IVC:::::::S::A:S::::::RVE:PE::F::
HQ2984A         :S:I::::::::::::G::::SE::::::::::L::::::S::::::::::::MET::T:
rrnAC3246       ::::I::::::V:::A:::::::::E:::::::::::G:::D::AT::::V:::::::::
Hut1811         ::::::::::HI:::::::::T::::::I::::::::::::::::::GV::T:::::IE:

consensus       AEEVHGLTNLSFVEGDLADRSFVDELLAVHEPDTIVHTAAQPSAPYSQINGERANYTQHN
#oth            12111122...1.1...2112..11.1221..2111.1.........1......1...2.
hla2255         V:------:::L::::::::D::LQ::ETY::::VL:A:::::::::S::::::L:::R:
HQ2984A         :Q:::::R:::::Q:::T::::::::CQI:::QV::::::::::::::::::::::::Q:
rrnAC3246       :R::::::::::::::::EK::::::::::::EVV:::::::::::::::::::::::::
Hut1811         ::::::I::::::::::VEKA:::::::::::::::::::::::::::::::::::::::

consensus       NMQATRNLLWGLEEHDLTDTHFIETTTTGVYGAPEFPIPEGGATMENQDERDEVPFPAMA
#oth            .21111..12..2.21.2...11......1....1.......321.21122......1.1
hla2255         :VSMNL:::H::A:CG:D:::::::::::I::::H:::::::LEV:RK:GS::::::::G
HQ2984A         ::::::::VF::H:N::V:::L::::::::::::::::::::TV::H::S::::::::::
rrnAC3246       :L::::::::::::::::::::V:::::::::::::::::::S:::::G::::::::N:G
Hut1811         ::::::::::::::::::::::::::::::::::::::::::::::::G:A:::::::::

consensus       GSWYHATKSHDAANLRLAHSQFDIPISDVRTAITYGTETEETRADDRLATRFDFDYYFGT
#oth            .....3..11..1.1...21..11.1.1.....1..11.1..2.12113..........1
hla2255         :::::Q:::F::::M:::E:::EF:M:E:::::V::::::::Q:HES-P:::::::::::
HQ2984A         :::::M::::::::::::::::::::::::::::::AG:K::::::::M::::::::::V
rrnAC3246       ::::::::GF::Q:M::::T:::::::::::::V::::::::::::::K:::::::::::
Hut1811         :::::L::::::::::::N::::::::::::::::::G::::E::P:::::::::::::V

consensus       VAHRFAAQAVAGYPITVYGKGEQRKPFISLEDAVEGLARLALTDPDERPDDHVVYNQVTR
#oth            .21..1........2......1....1111..1..1.21111212121111221......
hla2255         :VN::C::::::::::::::::::::MV::::T::S:V::-VEEGHSGD:GIDI::::::
HQ2984A         :::::::::::::::::::::K:::::::::::::::T:::V::S:::::::::::::::
rrnAC3246       :T:::C::::::::V:::::::::::::::::::::::EV:::::::::EGLT:::::::
Hut1811         ::::::::::::::M:::::::::::::AM::::::::E:::I:::D:::::::::::::

consensus       AISIVEIAETIADVADEFDLDVAVEHFENPRDEDETHKMEIENDRYADLIGGQSQTFEEG
#oth            111...311...1.13.111121.1.1....1...1....1..1.111.11..2211.1.
hla2255         PVA:::L:::::E:G::::::A::K:Y::::N:::E::::M::::FL::V:::Q::L:::
HQ2984A         P:::::MGT::::::T::GFNTD::::::::::::::::::::N:::N::::::V:::::
rrnAC3246       ::::::::::::::GS:Y:::::::::::::::::::::::::::::::::::::S::D:
Hut1811         ::::::V::::::::G::::::D:K:Y:::::::::::::::::::::::D::DT:::::

consensus       IRDILGTLTDYADRIAAHEDRFLPGVLTD----D--
#oth            112111..122311.31.......1..211111122
hla2255         :::V::::V:EQ:::::::::::::::::::::E::
HQ2984A         ::EVFE::::CTE::KS:::::::S::E:RLAEEAE
rrnAC3246       VD::F::::R:::T:E:::::::::::SE:::::::
Hut1811         V:S:::::VE:D:::T::::::::::::::::::ED