4 genomes BUD2297 8 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0723 rrnAC3240 - - - Hut1800 - NP4708A HQ1086A HQ2998A HQ3506A HQ3598A

Pairwise sequence scores
Consensus score	1242	HQ3506A	HQ1086A	Hut1800	HQ2998A	rrnAC3240	HQ3598A	rrnAC0723	NP4708A
465	HQ3506A	1264	276	233	175	177	366	372	327
531	HQ1086A	276	1196	258	205	327	306	365	412
650	Hut1800	233	258	1240	511	616	300	333	285
537	HQ2998A	175	205	511	964	548	236	279	263
704	rrnAC3240	177	327	616	548	1248	368	410	380
728	HQ3598A	366	306	300	236	368	1286	627	557
709	rrnAC0723	372	365	333	279	410	627	1207	593
719	NP4708A	327	412	285	263	380	557	593	1276

171 symbols
consensus       MADLLTHVLIAYALCTLASWRIDWLTRRYVTVGMAGAAIPDLVKIELLIPEETVEALLGV
#oth            14211323244254634333454333552334414.121.23313511345641244113
HQ3506A         :T:::::::::F:VGQ:VASVYP:V::S:R:AILT::V::EI:::::V::GY:LTT:::T
HQ1086A         :S:::::::SM:V:S:::V:Q:::FN::::GIT:L::V:::AA:GL::TGP:F:--VF:I
Hut1800         :::::ST::VT::AF:I:::W::G:D::WIV:A:G::::::::::QI:VE:S:::NA::L
HQ2998A         ---------------------------------:::V:::G:I:::I::DAGV::T::::
rrnAC3240       :::::::L:AP:I:L:V::::V:::DQ:W:V:::G:::::::::VGIVLN:RV:::F:::
HQ3598A         :P:::A::F:::SV:RIL:::LS:::NQ:I:L::V::F:::::::K:V::DWR::Q::::
rrnAC0723       :P:::S:AF::FTI:::L:L:Y::::GE:::::::::F:::MA::K::VDSA::::A:DI
NP4708A         ::E::::::A::I:A:AL:::WRS::AP::::A::::VT:::NRLA::L:G:H:::T:::

consensus       PFDWAPVATLGGVLLAAGIGALLFEARERRRIFGLLALGALTHLLLDGLLVTADGRSGAL
#oth            22316334132124353321225364361143445143.2421343.5234523222433
HQ3506A         T:S:N:L:SVY::TISIL::T:IVVPDA:::::LT::V:V:::IV::IFV:QPAPTI:F:
HQ1086A         RGS:YALQ:I:SAVAFIFA:V:::Q:D::PA:V:G:S::VV::MF::L:VIRT::TAP:Y
Hut1800         :::Y::::SVA::AV::::I::C:GK:W::KAYAV:VA:GGFS::I::MR:Y::SFA:FY
HQ2998A         ::KY::ISS::::::I::AITIF::-:Q::Q::SF:LF::FSS:VV:::W:F::::::FW
rrnAC3240       ::TYM::S:::::::LT:VITVA::R:RW::V:::VTF:G::S:::::MR:Y::::AS:W
HQ3598A         ::S:ESFT:G:::::STL::VV:LS:T:::KGGTV:::::::::IA:S::R:PT:::TQ:
rrnAC0723       ::::LG:H::::AFV:VLV::VVVNRSD:::VV:::S:::AS::FA:A::LK:S:::YEV
NP4708A         :V::GAFH::::TAVVVAV::::TP::H::LVAAM::::::S:HA::M::F:PT:::Y:V

consensus       LWPLTQYRPP--TPGLYLSSDPWPLVVAGGIAAVVWGLDR---WR--AES-
#oth            11.333442111223113111442444342325532432232254642322
HQ3506A         :::VPEIE:RLVNID::R:T:W:LPFPGAA::F:T:YF--:::TDVATD:D
HQ1086A         :Y:::WA:L:::SGDI:::::I::SLIII::TSII:YV::R::--::---:
Hut1800         :Y::-WV:::::::N:FV::::AV::::LL:SVMTF:::::::::TSTQ::
HQ2998A         :Y:FSWW:::::::S::IT::VRV::T:IL:S:::FA:::::::KY:---:
rrnAC3240       :Y:F:NWQ::::::S::V::::TV::::VLA:GT:AV:::QMRV:R:---:
HQ3598A         :::I:::TT::::::::::TQ:E:TI:T::C:IL:::IHQYRVKDSK::::
rrnAC0723       :::::::H:::::::::::T:I:LTG:T:A::VSA:LF--:::--:T::::
NP4708A         F::::::T:::::::::::T:R::ALA:::L:::::L:::R::REMA::DR