3 genomes BUD2344 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0221 HVO_A0533 Hbo3553 Hbo3679 - - - - -

Pairwise sequence scores
Consensus score	1544	Hbo3553	rrnB0221	HVO_A0533	Hbo3679
1296	Hbo3553	1571	1132	1162	1199
1260	rrnB0221	1132	1497	1191	1170
1404	HVO_A0533	1162	1191	1536	1312
1382	Hbo3679	1199	1170	1312	1550

203 symbols
consensus       --T--HERDYRSQVRDAFPELDDIEDDDLREKVVEAWCLGLERGGWRDIADIPYAWNIHE
#oth            12122232..12..321..1122.1212..22.21..2.1.2....21.3.........1
Hbo3553         MA:EV:::::E::::::::S:RR:::::::::::D::V::::::::QS:H:::::::::D
rrnB0221        ::-::-MP::EE::TQ::::::Y:SS::::S::::::T:A:D:::::::M::::::::::
HVO_A0533       ::-::MSH:::A::EV:::::::::::G::DR:R:::::::A::::::::::::::::::
Hbo3679         :M:DE:T:::::::K:S:::IA:::AET:::Q:I::::::::::::T::E::::::::::

consensus       VTNVEHVRGVTRIAVQSAEEQRDFHGADPDIDVIRAACLLHDVGKCYEYVDFVDDDRLDD
#oth            ....1......1..221.11.11.......1..11..1.............1.1113.22
Hbo3553         :::::::::::K::L::::V::::::::::::::V::::::::::::::::H::AEL::G
rrnB0221        ::::R::::::K::RE::I::QE:::::::::::V::T:::::::::::::::E:EK:L:
HVO_A0533       :::::::::::::::RA:::::::::::::F::V::::::::::::::::::::::::::
Hbo3679         ::::::::::::::::::::::::::::::F:::::::::::::::::::::::::V:ST

consensus       PDPE-YATEEIPHSLSGYALAHEVGCPLAVQRAIPHFIGEIPTRTLEAELVKSANSASSN
#oth            1.111..22.1...1.............1........1..1...................
Hbo3553         T:R:H::N::::::I:::::::::::::D::::::::L::V:::::::::::::::::::
rrnB0221        :::R::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HVO_A0533       :::::::SG:::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo3679         ::::::::A:V:::::::::::::::::::::::::::::::::::::::::::::::::

consensus       AITQAAMGISLQEWVDEYSQTQ-
#oth            ...111...1.1...11....21
Hbo3553         :::ES::::T:K::::K:::::N
rrnB0221        ::::ST:::T:::::::::::-:
HVO_A0533       :::::::::::::::E:::::::
Hbo3679         :::::T:::::::::EK::::S: