3 genomes BUD2345 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0214 HVO_A0517 Hbo3550 - - - - -

Pairwise sequence scores
Consensus score	2563	HVO_A0517	rrnB0214	Hbo3550
2157	HVO_A0517	2571	1924	1872
2255	rrnB0214	1924	2564	2014
2218	Hbo3550	1872	2014	2575

334 symbols
consensus       MQLGTGLFTCQQRPDDDRAMAEIYDEMLELGREIDNAGLDSAWVSEHHFLDDDYLSGTMP
#oth            .1.........1......212111....1..12..2.....1.......21.2....11.
HVO_A0517       :K:::::::::R:::::::::DL:::::T::::::D:::::::::::::MP:G:::::::
rrnB0214        ::::::::::::::::::ETS::::::::::EV::::::::::::::::::::::::VT:
Hbo3550         ::::::::::::::::::S:T::H::::::::T::E:::::T:::::::S::S:::::::

consensus       ALGALAAVTDNIEIGTCIALAPLYDGIRLAEDAATVDLISGGRTTLGLAIGSNPREFDAF
#oth            .....111.111.1.1.........21.....1....11.1..1...11....12..11.
HVO_A0517       :::::G:A:ESV:L:::::::::::P::::::::::::::::::::::::::::::::::
rrnB0214        :::::::::::::::S:::::::::S::::::I::::Q:::::::::M:::::VS:::::
Hbo3550         ::::::S:::::::::::::::::::V:::::::::::L:D::L::::S:::::N::EQ:

consensus       GVPRDERVERLADAVNLLRGAWSDGPLDYEAEFHDGSPDVTVTPKPAHDVPLMLGGAAKP
#oth            .1.11..11..1.1.21..1......111121..12121.1.....111..1.....11.
HVO_A0517       ::::::::D::::::S:::D::::::IAH:SP::E:ATG:D:::::::::::::::::::
rrnB0214        :I:D:::A:::::::DT:::::::::::::P::::I:S:::::::::::::::::::SR:
Hbo3550         ::::E::::::S:Q:::::::::::::::D:::::V::::::::::KDG::I::::::::

consensus       AVRRAARTADAWCAPSSLSIDGVRKRVEDIRNVREAEDIDGEFQIYVLQHGFVGDSREDA
#oth            ................1..21.111......1..12.111.1.11.1....11...111.
HVO_A0517       :::::::::::::::::::L:::::::::::S:::::GL::::T::::::::::::KAE:
rrnB0214        :::::::::::::::::::V::::::::::::::DD:::E:D::V:::::::I:::::::
Hbo3550         ::::::::::::::::K:::T:LQR::::::::::T::::::::::I::::W::::::::

consensus       WAAMRDGYLYIQRRYAEIFSGEEVAELDAERKQELKEQAIFGTPDQVVAELNRYREALGD
#oth            .22.1.....1....1.1.1.12.2..22..11...1..1.....1.11..22..1....
HVO_A0517       :D::::::::L::::::M:::D::H::SD::RA:::A::V:::::D:::::D:::D::::
rrnB0214        ::Q::::::::::::E::::::T:::::E::::::::::::::::::T:::ES:::::::
Hbo3550         :ET:K::::::::::::::G::P:D::P::::::::::::::::::::D:::E:::::::

consensus       DIHFIFRTYHPGIGTDAMAECIRRLGEEVAPRIA
#oth            ....1....1..2..22.21111...1..2.122
HVO_A0517       :::::::::Y::::::R:V:SV::::D::R::L:
rrnB0214        ::::::::::::T::QE::::::::::::Q:K:S
Hbo3550         ::::V:::::::V::E::KT::Q:::::::::V-