3 genomes BUD2347 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0246 HVO_A0512 Hbo3893 - - - - -

Pairwise sequence scores
Consensus score	3655	rrnB0246	HVO_A0512	Hbo3893
2725	rrnB0246	3676	2504	2484
3341	HVO_A0512	2504	3662	3043
3288	Hbo3893	2484	3043	3666

483 symbols
consensus       MEYSGPTDLYIDGAWRAAASGETIETRDPATEAEYAEVARAGEADVDAAVRAANAAAARG
#oth            ...1..12..11.2.22.2111111.2.....22..2.12.112.111..2..22.211.
rrnB0246        :::T:::::::G:E::E:TN:DS:::E:::::RT::S:QK:EAS:I::::E::Q::V:E:
HVO_A0512       :::::::G:::::D:V::::D::::::::::::P::::::::::::::::::::S:G:::
Hbo3893         ::::::SE::V::::TD:V::::LQ:F:::::T:::T::L:::E::RR::D::SR::E::

consensus       SEWATLDPAERGAKLRAMADAIEARKDEIALVESHDNGKTPFEAGMEVQMVIDTFRYYAG
#oth            1..2121111.111.11...1..11...121..............1.11..1....11..
rrnB0246        :::::M::GT:R:::H::::::::M:::LSM::::::::::::::L:ID:::::::H:::
HVO_A0512       G::E:TSA::::E:::::::F::::::::::::::::::::::::::::::V::::::::
Hbo3893         :::TE::::::::A::R::::::E:::::T:::::::::::::::::::::::::::F::

consensus       WTDKVTGEENPVPGRRLNYTTREPLGVTGHIVPWNYPFQLAGRSLAPALACGNTAVVKPS
#oth            ....11.121..112.1.......1...1..1...........1......1..1111...
rrnB0246        :::::R:D:I::ENG:::::::::V:::A::A:::::::::::G::::::T::SVIL:::
HVO_A0512       ::::::::Y:::::::V:::::::::::::::::::::::::::::::::::::::::::
Hbo3893         ::::L:::H:::::D:::::::::::::::::::::::::::::::::::::::::::::

consensus       SQTPLSALYYGLAAEEAGLPDGVVNVVPGSGSEAGAALAEHDDVAHVTFTGSTEVGKRVM
#oth            11........11..............1..1.....2..12.21.1..1.....11..2.1
rrnB0246        AM::::::::AK:::::::::::::::::K:::::D::TG:EG:D::::::::G:::T:Q
HVO_A0512       :::::::::::::::::::::::::::::::::::S:::S:P:::::::::::::::G::
Hbo3893         ::::::::::::::::::::::::::I::::::::::::::::::::A::::::I:::::

consensus       ADAAANVTGVTLELGGKGPAVVFPDADLDAAAKGIHYGIFMNAGQMCWAGSRLLVHEDVA
#oth            11..21.11..........21...1...1...1.11.............1..11...1.1
rrnB0246        RT::DA:AD:::::::::::::::::::::::R::Q:::::::::::::N::IV:::::Y
HVO_A0512       :::::::::::::::::::N::::::::::::::V::::::::::::::::::::::E::
Hbo3893         ::::Q::::::::::::::HL:::E:::G:::::::::::::::::::::::::::::::

consensus       DDLVERVVERAESTPLGSGIDDDGRMGPVVSEDQRQDILDYIQTGVEEGATVACGGGVPE
#oth            111.1.1112..11...1......1......1211221.1..21.11......1.....1
rrnB0246        EEM:S:MA:I::NI:::G::::::Q::::::AG:Q:E:::::E::K:::::::A:::::G
HVO_A0512       ::::::::A:::::::::::::::::::::::SH:G:V:E::SL::::::::::::::::
Hbo3893         :::::::::G:::::::::::::::::::::::::EQ:::::::::D:::::::::::::

consensus       DKETGYFVEPTVLADVTNDMTVAREEIFGPVLSVIEFSDEEEAIELANDSPYGLLAGVWT
#oth            ..11.1......11..1.1..1.1........211.1..111..11.....1..1111..
rrnB0246        :::::H::::::F:::D:E::I:Q::::::::TA::V::::A::DV:::::F::T:C:::
HVO_A0512       ::D:::::::::::::::::::::::::::::V:T::::RT:::::::::::::::::::
Hbo3893         :::S:::::::::T:::::::::::::::::::::::::::::::::::::::::S:I::

consensus       EDLSRAHRVADALDYGMVSVNEYPVTFPQTPFGGTKQSGHGREQGAEAVREYTQAKNVNI
#oth            12.1...2.1.1......1...1.1.1.........1..1..1..21.1111.12...12
rrnB0246        N::T:::T:T:R::::::M:::T:N:W:::::::::::::::A::EQ:IES::EV:::H:
HVO_A0512       :G:::::G:::::::::::::::::::::::::::::::::::::::::::F:::::::L
Hbo3893         :Q::::::::::::::::::::::::::::::::::E::N:::::L::::::::T::::V

consensus       NLG
#oth            1.1
rrnB0246        :::
HVO_A0512       :::
Hbo3893         K:D