3 genomes BUD2353 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3262 HVO_0501 Hbo1026 - - - - -

Pairwise sequence scores
Consensus score	917	rrnAC3262	Hbo1026	HVO_0501
520	rrnAC3262	997	292	312
524	Hbo1026	292	901	289
565	HVO_0501	312	289	981

141 symbols
consensus       ----MRLSRRRRIAALACGCALGVIVASVAPVPEGAGAQA-GLLG-LGLDKWVHAAAYAG
#oth            11111211222.222212111.2.212112.112.122221111.121...1..112.12
rrnAC3262       :::::DV:GF::YLP-:I:FS:L:L:T:LL:::::::E:VPA::::FA::::::::S:GT
Hbo1026         :::::H::::V::VS:V:W:::V:::SA:-::QS::PVS::::F:::::::V::FG:::V
HVO_0501        VNPIT::RENP:W::V:L::::::FA:::::T:P:SL:PM::P::VV:::::::::G:::

consensus       LAFLAASARRARDVREVAAAVIVAGALGAGVELLQAALPSRGFSGADAAANAAGAVLGGA
#oth            1111212121..11221.11.211222.1.1..2..21.2.21121.12..22...1112
rrnAC3262       ::V:L:WG:Q::::TT:::L:::SLCY:::::::::LV::::V::::FV:::V::::A:L
Hbo1026         T::::GV:L::::::GL:L::V::VV::S::::M:::::T:T::LG:::::TI:::C:A:
HVO_0501        :G:AF:::V:::GRD::::::LA:::F:::I::V::V::Y:S:GV:::G::L:::::::V

consensus       AWRAAHR------RADARG--
#oth            112212.11111112.22211
rrnAC3262       ::LV:::SDALSD:T:PQSRQ
Hbo1026         :Y:LVS::::::::L:DS-::
HVO_0501        V:V::V:::::::V:::::::