3 genomes BUD2355 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2451 HVO_1932 Hbo2100 - - - - -

Pairwise sequence scores
Consensus score	2314	Hbo2100	rrnAC2451	HVO_1932
1471	Hbo2100	2350	1155	1278
1842	rrnAC2451	1155	2349	1447
1879	HVO_1932	1278	1447	2394

322 symbols
consensus       --------MDIARIAVHESVGRACPPELLVAALSGADVRV----ERVGDDESFDAGDAVV
#oth            11111111.2.2.11111..1122.1212121.112212.1111.1111111.2221211
Hbo2100         :::::::::T:-:LGI:P::::IF::S::QSM::D:EAT:DLTN::LDAS:::---NGL:
rrnAC2451       ::::::::::::::::::::AK:::L:AM::::Q:P:::::::::T::::A::::S:C::
HVO_1932        VSRRDPSA:H:E::::D:::::TM::G:F:E::::RG:P::::::::::::E:GP::::A

consensus       TFGHRDAFLDA--DWVHCVRAGYDEFPVDAYEAAGTALTNSTGIHGDTVGETVVGYLLAF
#oth            ..12121.1..111.1.21......111121111112.1....1..11.2.1....1121
Hbo2100         :::YDPS::::GL::I:V:::::::::L:TLRDHEIT:S::::::::A:S:A::::::Q:
rrnAC2451       ::SP:E:::::::A:::GI:::::::D:::::::::V::::::::::::P:::::::T::
HVO_1932        ::::::::V::::::::::::::::Y::SD:::::::::::::V::T:::::::::M:TL

consensus       ARRLHAYRDAQRDREWNQPAYDAPFTLDGERVCVVGLGTLGRGVADRADALGMDVVGVRR
#oth            ..1..2..1211.21.22121121...1..2........1.1.111.11....2.1....
Hbo2100         ::G::R::LHEP:H:::P::W:DT::::::S::::::::::::I:R:::::::S:S::::
rrnAC2451       :::::V:::R:::ND:T:EP:::::::T::Q::::::::I:Q:::::T::::::::::::
HVO_1932        ::::::::::::::::DL:R:TE:::::::::::::::::::::V:::A::::E::::::

consensus       SGDPVENVEAVYTPDELDAAVADARFVVLACPLTAETEGMVAAAALAAMRADAYLVNVAR
#oth            111.111.12111.11.22..1.1....112...21..1..2.22121..2.1.......
Hbo2100         TPT::DH::TR:G:Q::LD::S:V::::V:V:::DR::E::G:E::S:::D:::::::::
rrnAC2451       ::::A::::R:::::::::::::::::::C::::E::::::D::L::Q::::S:::::::
HVO_1932        ::::::::S::F:::R:HE:::::::::::M::::::::::::PTFE:::E:::::::::

consensus       GPVVDEAALVAALDAGDIAGAALDVFEAEPLPDESPLWEHEEVIVTPHVAAATERYHEDI
#oth            ....1121.12..1212.......1111....211...1212121...11...22.111.
Hbo2100         :::::QS:::D::RSAS::::::::::E::::P::::::M:H:VI:::A:::::D:PNR:
rrnAC2451       ::::V:D::LN:::T:T:::::::AHW::::::DH:::N::SA::::::::::S::::::
HVO_1932        :::::::D::::::::::::::::::::::::S::::::FD::L:::::S:::GK:::::

consensus       AALVRENVERAAAGESLANRVA
#oth            .......111211.11.2...1
Hbo2100         :::::::SR:L::::::::::V
rrnAC2451       :::::::::::TR::::R::::
HVO_1932        :::::::::KI:::DP:T::::