3 genomes BUD2359 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0224 HVO_A0514 Hbo3890 - - - - -

Pairwise sequence scores
Consensus score	1750	rrnB0224	HVO_A0514	Hbo3890
1171	rrnB0224	1758	939	1041
1388	HVO_A0514	939	1498	1221
1544	Hbo3890	1041	1221	1757

242 symbols
consensus       VS-DPLLSVRGLVSGYGSTRVLQGVDIDVPRGSVVTLIGRNGVGKTTTLRSIHGNVAPNE
#oth            111.....111111...1.1....112..11....1.1............1.2.112.21
rrnB0224        MT::::::LEDVRA:::M:E:::::SM::E:::::S:V::::::::::::::V::IT::G
HVO_A0514       ::D:::::::::::::::::::::I:F:::::::::::::::::::::::::L:::P:S:
Hbo3890         ::::::::::::::::::::::::::::::S:::::::::::::::::::T:::S:::T:

consensus       GSVTFDGADITTLSPEQTAREGIALVPEERRVFPGLTVRENVEIGRIGGRRDAEKPAVDA
#oth            .111.1.2...1111.2.1.1..11...1..1..1...1..111.1..1111211.2.12
rrnB0224        :::::N:E:::::TS:T:I:R::GF::::::I::E::::::IRM:E::S-ESP:G:S::D
HVO_A0514       :TI:::::::::::::K:::::::::::::::::::::S:::::::::::::::::T:::
Hbo3890         :::M:::T:::DY:::::::::::::::D:::::::::::::::::::::::TT::::EE

consensus       IIDEFENLARHRNSRGSALSGGEQQMLAIARALVSAPDLLLLDEPTEGLAPAVVRQVQRK
#oth            1211....1111212.12..........11...111....1..........21.2.1111
rrnB0224        VL:M:::::EREHRD::V::::::::::VG:::TAD:::::::::::::::Y::::IEDL
HVO_A0514       :V::::::::::::::AN::::::::::::::::::::::::::::::::::::K:::::
Hbo3890         ::S:::::R:::E:N:::::::::::::::::::::::::M::::::::::SI:Q:::::

consensus       IAELNDDGITILLVEQNIQVALDTADYTYILDKGQIVHEGSAADIAAADEVLDRYLGVSA
#oth            .21..12.212121111221112222121112112211112122211211....1...12
rrnB0224        :R:::EQ:::V:V:::::P:::EVSE:::::E::K:::::T::E:QDDE:::::H:::GV
HVO_A0514       :E::::::-------------------------------------::::::::::::::M
Hbo3890         ::S:::E:V::::::::V:::::::::V:::::::V::::::D:V::N:D::::::::::

consensus       AD
#oth            21
rrnB0224        T:
HVO_A0514       ::
Hbo3890         VE