3 genomes BUD2360 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0235 HVO_A0527 Hbo3541 - - - - -

Pairwise sequence scores
Consensus score	1911	rrnB0235	Hbo3541	HVO_A0527
1328	rrnB0235	2250	942	934
1309	Hbo3541	942	1925	865
1351	HVO_A0527	934	865	1925

297 symbols
consensus       --------------------------------------MAEDPAQNRPVTTAERSIQILE
#oth            1111111111111111111111111111111111111112221221...1.212112.1.
rrnB0235        MRAPCRHGLAFTCRSGRATTDSSYSNKTLVSRLVMCVR::IP::V::::G:I::A:E:M:
Hbo3541         :::::::::::::::::::::::::::::::::::::::T:Q:RS::::::T:S::::::
HVO_A0527       ::::::::::::::::::::::::::::::::::::::VMT:DE:R::::::AT:LG:::

consensus       QLKDNDGATLDELTAELDLAKSTIHRHLKTLEANDLLVRDDNQYRLGLRLLDFGISARDR
#oth            1..2222212211121.11.1..2..111..1212111211221211111..1.12..12
rrnB0235        Y::EH:T::VS:M::H::C::::T::YM:::A::S:::E:::E:Q::I:F::Y:EV::NK
Hbo3541         :::::P:R::::::E:::::R:::::::L:::D::::F:ENG:FY:S:W:::::::::::
HVO_A0527       :::SGGPMGPTG:AS::G:::::V::::::::REGFV:P::DG::V:::::::::Y:::Q

consensus       HRLYDVAKPRVDELAEETGEKVWCVAEERGRSVHLYGAAGAHSVRTPARVGQRRYLHQLA
#oth            221111.1121.1...1.1..1.1121.21111.1.1.2.11112.2..1.2.21...1.
rrnB0235        Y::::E::::::::::::E::I::AV::H:::::I:::Q:K:::Q:Y::::H:N::::H:
Hbo3541         ISFF:::RRQ::R::::::::::L::K::DY:::::K:S::SPLE:S:::::::H:::::
HVO_A0527       :Q::E::::KL:::::Q::::::::T::Q::GF::::::::::::::::E:T:S::::::

consensus       AGKAILAALPDERIRDIIDRHGLPAATPQTITDRDALLEELAAIRERGYAFNRQESVEGL
#oth            ......121..1222211..1..122.1.....111.2..122..1..1.1.22.1111.
rrnB0235        :::::::H:::NQ:TKT:::::::GR:::::::::E:W::IE:::D::::::F:::::::
Hbo3541         :::::::Y::::ESHG::::Q::IE::D::::::E::::::DE:::::::::LG::I:::
HVO_A0527       ::::::S:F::::V:::V:::::::K:::::::P:::F::::T:::::F:L::E:I:PK:

consensus       HAVGAPITDEEGRPVGAISISGPANRLRGDRLRDELPDLLLGAANEIEINIAHG---
#oth            1...1111.111211.1..1...11.12.221111.111..1221.12..2222111
rrnB0235        ::::::::::NDIAI::::V::::S::E:PI::::::T::::VV:::G::M::P:::
Hbo3541         N::::::R::::T:::G:::::::::VK:SL:::::::K::ATID::H:::RY:SAD
HVO_A0527       ::::VAV::N:::::::::::::S:::::::MTGD:A:::::::::V:::LNFS:::