3 genomes BUD2361 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3446 HVO_1605 Hbo3032 - - - - -

Pairwise sequence scores
Consensus score	3829	rrnAC3446	HVO_1605	Hbo3032
3084	rrnAC3446	3831	2901	2862
3621	HVO_1605	2901	3839	3393
3518	Hbo3032	2862	3393	3983

539 symbols
consensus       -------MAAETYGIISLLPALLAIVLTLASRQVLLSLFTGIWIGATILVGWNPIAGAAR
#oth            1111111121111.2...1..11...1..21........1.......1......12...2
rrnAC3446       :::::::::P::::L:::F::M:::::::FT::::::::A:::::::V::::::A:::::
HVO_1605        ::::::::P:::H:V:::::::F::::::::::::::::::::::::::::::::G:::Y
Hbo3032         MLCYRTFVM:AE::::::::::::::M::V:::::::::::::::::::::::::E:::H

consensus       SLQLVINNVTESFNSKLLLFTFLSGAMLGMIFLSGGMNALAQRIIARIRTRKQAALGTSI
#oth            ...2.111..11..1........1.............1...11112..2..1..1...12
rrnAC3446       :::F:VD::::P::V::::::::I:::::::::::::::::SQMVK:::::R:::::::L
HVO_1605        ::::::::::::::::::::::::::::::::::::::::::::::::K::::::::::V
Hbo3032         :::M:::S::A::::::::::::::::::::::::::S:::::::S::Q:::::E:::G:

consensus       LGMLIFVDSYASTMITGSVMRPITDKFDISREKLAYLLDSTTSPVVSVAVVSTWVGFEVG
#oth            ...1.....................1..........1.....1.11.11.....1.....
rrnAC3446       :::T::::::::::::::::::::::::::::::::I:::::A:TA:IS:::::L:::::
HVO_1605        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo3032         :::::::::::::::::::::::::Q::::::::::::::::::::::::::::::::::

consensus       LIREQIASI-GIDQSAFLVFLQSIPFRFYSLLAVALVFILVVMDWDFGPMARAERRAKEE
#oth            ..11.2211111.1...21..1...1.......111...1111.1.....22..1..1..
rrnAC3446       ::A::LTT:::V:R::::L::E:::Y:::::::L:M:::V:IA:L::::::E:::::R::
HVO_1605        :::::F::L::::::::V::::::::::::::::::::::::::::::::Q:::::::::
Hbo3032         :::D::N::SS::::::M::::::::::::::::T:::::I:::::::::KQ::K:::::

consensus       GKVLGDDADPLIETREEDIVTPDHVDPRWWYFAAPIVALVAVTGFGLLYSGG-WPGRAPV
#oth            ......1....1..1.1..1...1.11......1..12..1....1.1....11112211
rrnAC3446       ::::::N::::M::Q:D::::::::E::::::::::I:::G::::S:Y::::GFA::GLT
HVO_1605        :::::::::::::::::::::::Y::S::::::::::T::::::::::::::::::QV::
Hbo3032         :::::::::::::::::::D:::::::::::::V:::S:::::::::::::::::SK:::

consensus       EALKNAATADAILWGVFSACALLLAILVGHARVELEEVSDAIFEGFKMVMFPVAVLSLAW
#oth            1..12.......1.11....111.1.......11111...1...................
rrnAC3446       D::S::::::::V:AS::::LVI:T:::::::IAVD::::::::::::::::::::::::
HVO_1605        ::::D:::::::::::::::::::::::::::::::A:::::::::::::::::::::::
Hbo3032         ::::G:::::::::::::::::::::::::::::::::::S:::::::::::::::::::

consensus       TIGSVSEALGVGPYVVSISQGIITAEMLPAVVFISAAIISFSIGTSWGTMGIMFPVAVPL
#oth            1..1..1......1.11111.1..121....1.21.1....1..........1....1..
rrnAC3446       S::A::Q::::::::IA::E:::::G:::::I:V::V:::::::::::::::L::::I::
HVO_1605        :::::::::::::F:::VA::V::P:L::::::LA:::::::::::::::::::::::::
Hbo3032         :::::::::::::::::::::::::P:::::::::::::::A::::::::::::::::::

consensus       AHQLGAPLPGAIGAILTGSLFGDHCSPISDTTVMSSMFAGADHVDHVNTQIPYAVLCGAV
#oth            121.....11.11.....1..............1.....11.............1.1.2.
rrnAC3446       G:A:::::AP::A:::::A::::::::::::::::::::AS:::::::::::::::A:I:
HVO_1605        :Y:::::::::::::::::::::::::::::::L::::::::::::::::::::::::::
Hbo3032         :V:::::::::T::::::::::::::::::::::::::::::::::::::::::L:::V:

consensus       ATGLFLAAGYGV----------GALALLGIGVAALFAAAYYLSEHADVNVPNSFGSSSD
#oth            ......12....111111111112121.21.11.11221.1..1111.2..221..11.
rrnAC3446       ::::::M:::::::::::::::P:YIA:P::L::VGSVT:L:::QLS:E::S:Y::KA:
HVO_1605        :::::::S:::::::::::::::S::::::::V::::L:::::Q::::S:::V::::::
Hbo3032         :::::::G::::SSLTVFGYTV:P:V::VA::::::V::::::::::::::TT::::::