3 genomes BUD2363 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0252 HVO_A0507 Hbo3897 - - - - -

Pairwise sequence scores
Consensus score	2507	rrnB0252	HVO_A0507	Hbo3897
2100	rrnB0252	2764	1764	1904
2111	HVO_A0507	1764	2523	1870
2186	Hbo3897	1904	1870	2482

355 symbols
consensus       ----------------------------------LIIMRIDMDLETVKERAGPREFSPKD
#oth            11111111111111111111111111111111112222212.1111..1.....1.1...
rrnB0252        MRNSTIRHSSIIASHMCGCSYKTRLYGGKLVRTF:T:Y::::NVDE::D:::::::::::
HVO_A0507       ::::::::::::::::::::::::::::::::::M:VPDRP:::::::::::::Q:A:::
Hbo3897         ::::::::::::::::::::::::::::::::::---:M:E:::::::::::::::::::

consensus       DMPEEYRKAATRMIQFHANSEIMGAYLERPFIRKAPSIERKLAFSAKVQDEIGHGQLLYR
#oth            .1...........11......1..11..1....1...11..1.........1..1.1...
rrnB0252        :L:::::::::::LE::::::::::F:::::::::::::::M::::::::::::::M:::
HVO_A0507       :::::::::::::::::::::V::G:::K::::Q::::D:::::::::::::::A:::::
Hbo3897         :::::::::::::::::::::::::::::::::::::L:::::::::::::L::::::::

consensus       AAESLGIKTREEMLDELARGDGKFLNCFHYPMESWHETPMIAFFVDGAAMRRQATLKNSS
#oth            ......1...1....1..2.1.............12.1...1........1......21.
rrnB0252        ::::::V::::::::D::N:::::::::::::::YV:::::::::::::::::::::K::
HVO_A0507       ::::::::::D::::::::::::::::::::::::::V::::::::::::H:::::::T:
Hbo3897         ::::::::::::::::::E:K::::::::::::::I:::::G:::::::::::::::S::

consensus       WEPYAHAMDKVCFEEGFHVKHGESILRELMNGSKKQQEQTQEAFEEWWPRIIQFFGPTDD
#oth            .1........1.....1.........1..11.1112.121.1...2.....1......1.
rrnB0252        ::::::::::I:::::M::::::::::::::::R:E:RM::::::::::::L::::::::
HVO_A0507       :T::::::::::::::::::::::::S:::::::AT::K::A:::T::::::::::::N:
Hbo3897         :::::::::::::::::::::::::::::SQ:T::::::L:::::M::::::::::::::

consensus       KSTHHDFAAEVGLKTNTNDELRDAFLNTYIPKAEKYGLELPEYPRIEYDEDLGEYEVNED
#oth            1.1.1...1.....121.....21..11.2..11....12.11...11111212.2.1..
rrnB0252        Q::::::::::::::C::::::T::::::::::K:::::M:DE:::RENG:-:S:::V::
HVO_A0507       ::V:N:::Q::::::KS::::::T::D::V::::::::VV::::::::::E:DT:H::::
Hbo3897         ::::::::::::::Q:::::::K::::M:L::V::::::::::::::::::T:::T::::

consensus       DLDWDEFFTIAKNEYEGSHEQINSRARAQEAVAWVREMMDDQEAANGGETPQAAD
#oth            ..1....11111.1111121..21.221.1..2...12.12212221121111..
rrnB0252        :::::::::VSQ::::::I:::TG:RQ:::::Q:::D:::::TTT:S:PQS::::
HVO_A0507       ::N::::W:::::ASD::::::::::K::A::E::::S:HSW:G:S:A:::::::
Hbo3897         ::::::::Q:::::::PGVG::D::K:T:::::::::T::EY::NT::V::AT::