3 genomes BUD2369 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2786 HVO_0676 Hbo0859 - - - - -

Pairwise sequence scores
Consensus score	982	rrnAC2786	HVO_0676	Hbo0859
528	rrnAC2786	993	340	388
729	HVO_0676	340	1114	521
692	Hbo0859	388	521	982

154 symbols
consensus       -------MDDAVDDA---DRDKPLQAAVAGVVIALILLIAFGLLALGVEFFWIAFPVGFG
#oth            111111111121211111122211122.21..2.121.11.1....1122..21.1...1
rrnAC2786       ::::::::SQTLSH::::-:P::VS:V:SA::T:AT:::::::::::::S::L::V::::
HVO_0676        MTDAERVV::::E::SDD:D:S:::EL:::::V:::F:VG:::::::EWW:::V:::::A
Hbo0859         ::::::::::D:::G::::GETA::K::G::::::V:::::T::::D:S:::V:::::::

consensus       GVLPAAIGIVRIYEDRRGRNTHADRESETEDALETLRRRYATGELSEAEFERRVERLLET
#oth            1.....212122112122211221221...2..1...1...1..11.2...111.1..11
rrnAC2786       V:::::V:V:EYNQ:SDT:::TT:::::::S::A:::Q:::R:::::V:::::L:Q:::A
HVO_0676        ::::::LAL:::::S:::YDASESMTT::::::::::::::::::::E:::AK:::::::
Hbo0859         :::::::::TKW::Q:QKQ:::::KP::::E:::::::::::::ID::::::::::::G:

consensus       ETVADARERAAARR-------TERERALDRD---
#oth            111211122222221111111..212222.2111
rrnAC2786       PSSPAE:T:ET:HW:::::::::EQHGVS:VSDQ
HVO_0676        ::::::::S::S::REGKAGE::::T:F::::::
Hbo0859         :::E::ESYVSTP-:::::::::Q::E:E:-:::