3 genomes BUD2373 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0244 HVO_A0520 Hbo3686 - - - - -

Pairwise sequence scores
Consensus score	1005	rrnB0244	HVO_A0520	Hbo3686
767	rrnB0244	957	690	656
919	HVO_A0520	690	1019	811
879	Hbo3686	656	811	1016

137 symbols
consensus       -MSGNDDYAEIRERASNDPYCGTVGIDLAEVDDGYAETTLTVAEDHLNFHGTPHGGAVYS
#oth            111121111.1...111.11.111.11111122...1.1..12111...........1.1
rrnB0244        ::::VA:--:V:::IES:A::E:L:::VV:L:S:::Q:E::IT::L:::::::::::I::
HVO_A0520       :::EQ:::::::::::::::::R::::::::G::::::::::::::::::::::::::::
Hbo3686         MTD:::E::::::::::::F:::::VE::D:SG:::::::::GDE::::::::::::::T

consensus       LADAAFAAASNSHGDAAFALETNISYLDAVEVGETLRAVAEETHLGGRTAEYEVVVTAGD
#oth            ..............1..1.........1.111....1.1.1...1111..1...1.1211
rrnB0244        ::::::::::::::E::V::::::::::::DT::::S:I::::::A:S::::::T:::Q:
HVO_A0520       :::::::::::::::::::::::::::A:A::::::::::R:::::R:::::::::SG::
Hbo3686         ::::::::::::::::::::::::::::::::::::::::::::R:::::A::::::D:G

consensus       GERIATFRGRVYKPG--
#oth            .1..........1.111
rrnB0244        ::::::::::::R:-::
HVO_A0520       :::::::::::::::GR
Hbo3686         :D:::::::::::::::