3 genomes BUD2377 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0255 HVO_A0503 Hbo3790 - - - - -

Pairwise sequence scores
Consensus score	2299	HVO_A0503	Hbo3790	rrnB0255
2004	HVO_A0503	2309	1352	1653
1509	Hbo3790	1352	1646	1180
1870	rrnB0255	1653	1180	2075

290 symbols
consensus       MSVRDSLDEPRIIDTHAHQPTAEFLEDAGGEMMQDAARRFGTELETWDYEEMRAEYHEAG
#oth            1212122111111111111111111111111..1...21..112...1.11.21..1.21
HVO_A0503       :T:L:WV::::::::::::::::::::::::::R:::N:::A:M:::S::::I:::R:HD
Hbo3790         ::::::::::::::::::::::::::::::::::::::K::::T::::::A::E::::Q:
rrnB0255        -------------------------------::::::D::::D::::::D::L:::::::

consensus       IGRAVLLGWDAETNTGNPPVPNDYVAEVRDAYPDFFVGFGSVDPLKDDCVEEAIRCVEDL
#oth            112.1......................11.21.1................1..1......
HVO_A0503       :::::::::::::::::::::::::::::::H:E:::::::::::::::::::V::::::
Hbo3790         :SK:I::::::::::::::::::::::IC:D:::::::::::::::::::::::::::::
rrnB0255        V:G:::::::::::::::::::::::::::E:::::::::::::::::::Q:::::::::

consensus       DLSGFKFQQIAQGFDPSDEAHAALFDTIEDLGVPVVFHGGNSTLGACSPGGRGLKIKYGN
#oth            1.................12.22.111...................1.1.....1....1
HVO_A0503       G:::::::::::::::::DE:R::::A::::::::::::::::::::::::::::::::D
Hbo3790         ::::::::::::::::::::::E:::::::::::::::::::::::G:::::::R:::::
rrnB0255        :::::::::::::::::::R:DH:WS::::::::::::::::::::::A:::::::::::

consensus       PMLIDDVAAEHPDLDILIAHPAFPWEKEQLAICQQKGNVYMDLSGWLPKYIDDQVLHYAG
#oth            .........1..112.......1...1111111111111111111121111121111112
HVO_A0503       ::::::::::::::Q:::::::Y:::::::::::::::::::::::::::::E::::::K
Hbo3790         ::::::::::::QMP:::::::::::R---------------------------------
rrnB0255        :::::::::A::::::::::::::::::::::::::::::::::::V:::::::::::::

consensus       TVLQDKVMFGTDYPMIRPERWLESFARDFDADEDVQRKILFENAQRFLDR
#oth            11121111111111112122121112222122221211212111221222
HVO_A0503       ::::::::::::::::::G::F:::EEH:::S:E:K::L:W:::E:::EL
Hbo3790         --------------------------------------------------
rrnB0255        :::K::::::::::::D::T::::::::T:F:T::::::::::::E:F::