3 genomes BUD2379 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG2035 rrnAC0523 rrnAC2384 - - Hmu0214 Hmu1232 - - - -

Pairwise sequence scores
Consensus score	602	VNG2035	rrnAC0523	Hmu1232	rrnAC2384	Hmu0214
286	VNG2035	588	185	268	253	257
331	rrnAC0523	185	616	285	260	271
495	Hmu1232	268	285	611	423	459
499	rrnAC2384	253	260	423	599	485
537	Hmu0214	257	271	459	485	600

83 symbols
consensus       ---MADTMEVYTGEEVTVEHIKPLGSGGARFDITAEDGRKWRLDVTRDGDV-EVVTSWR-
#oth            11214313.212.21.2121212123112.1111221122.12.12.1.23111.11141
VNG2035         ::MD:E:V:A:N:NT:EIAPQR::E:::::VEV:DA::TE:E:::E:::SY::::A::NA
rrnAC0523       MPADSH::::RS:::::IRP:::V:EDVV:V::E::GV--::::I::E:EIAD:::TRDA
Hmu1232         ::::G::L:L:::DT:::::V:::SN::G:::V:::::::::I:::::::::D:::T:E:
rrnAC2384       ::::EG:I::::::::N:::::A::D::::::::::::::::V::A::::T::I::::H:
Hmu0214         ::::Q:S:::::::::::::V:T:S:::::::::TD::::::V::::::::::I::::::

consensus       DGTLADLDLPEWADDVTARLARV
#oth            ..2..1221.2132111211223
VNG2035         ::D:::VAV:AYVE:LLS::G--
rrnAC0523       ::::::R:::::I:E:::KF:QF
Hmu1232         :::::N::V:::M::::G::S:L
rrnAC2384       ::K::::E:::::G:::::::::
Hmu0214         :::::::E::D::::::::::::