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3 genomes BUD2405 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0589

HVO_0379

 -

Hmu0188

 - - - -

Pairwise sequence scores
Consensus score1740 HVO_0379 rrnAC0589 Hmu0188
804HVO_0379 1513 737 743
1620rrnAC0589 737 2229 1526
1624Hmu0188 743 1526 1743 

284 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
HVO_0379        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC0589       MDPYFELRLSELKSIPVVTWLQFSIDNAREPGILVQSGQIWALLPPELTEKTRCFAIELG
Hmu0188         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ---MRLKDYDNDDGKRVWLSDDELARLIDQAETPHQRLAFLLAGRVGLRRSEIIEVCPDD
#oth            111.111..121...1....11.1211112.1111..1..1.11.1...11.121.1.2.
HVO_0379        ::::KMQ::ESK:::K::::RS:VDT:L:V:DGTE::V::A:GA:C:::VA:VV::T:::
rrnAC0589       NEC:::::::::::::::::::::T:F:E:::::::::::::::::::::::::::::Q:
Hmu0188         ::::::::::D::::::::::::::::::E:::::::::::::::::::::::TG:::E:

consensus       LVDGPTGDHIRVWEDYAKRDKYREPPVPQEVVTIAETLAYQQDD--DEPLIDVAGSTVYR
#oth            1.1111.111.1..211.11....1.1.21111111111111.111.1.1211111..11
HVO_0379        V::TEV:KFL::::--G:GS::::T:I:TDLAATIAAVGDYR:ESS:T:VV:RTTR::RN
rrnAC0589       ::::::::::::::S:::::::::::::::::::::::::::::::::::L:::::::::
Hmu0188         ::E::::::::I::::::::::::::::S::::::::::::::::::::::G::::::::

consensus       WVRRAADRLEEETDDRGWSYLDVHDLRRTWGTYLLEQGVIPSVVMSWGGWEDWETFRQHY
#oth            ..11.112.11..2.1..11.11.........1.1111.1.11..11......1...2..
HVO_0379        ::TK:G:Q:V:::E:V:::F:GP:::::::::L:VGAE:E:GL::E:::::::::::E::
rrnAC0589       :::::::E:::::G::::Q:::::::::::::::::::::::::::F::::::D:::K::
Hmu0188         ::::::E:::D:::::::::::::::::::::::::::::::::::::::::::::::::

consensus       LGEFSPEAIARERGKVEFLEGGDENAEIVHPGTMPPAS-QHTAD
#oth            ..11.1..12.11.1112.1111122121111111221121111
HVO_0379        ::AY:L::Q::GM::I:W:-------------------:-----
rrnAC0589       :::::::::R::::::D:::::::S::V:::::::::::H::::
Hmu0188         :::::::::K::::R::Y:::::::T:::::::::SE:G:::::