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3 genomes BUD2411 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1623

HVO_1188

 -

Hmu0935

 - - - -

Pairwise sequence scores
Consensus score718 HVO_1188 rrnAC1623 Hmu0935
496HVO_1188 787 378 373
573rrnAC1623 378 727 450
567Hmu0935 373 450 715 

105 symbols
consensus       MTETIAGEVIHVVPPAELDDADLEPELAALADSRYVLVCRKGGKPSWLERIAAFLRRDPI
#oth            .1...2.1.1.111.11111211211111..1..1.1.1.1..1.11.11221.1..1..
HVO_1188        :::::R:D:L:AI::D::::E::S:::R::::::H:::V::::H::M:DLVL::V:::::
rrnAC1623       :D::::::::::::::DHE:Y:F::KM:S:::::::I::::::::::::::::::::Q::
Hmu0935         :::::T:::::::G:::::E:E:VA::::::E::::::::E::::G::::LWS:::::::

consensus       EPVTIVADRAAEEGAEITATVEETDIPGVY---------EATDGR
#oth            .1..2.1.211..12.211.111.221...111111111121121
HVO_1188        :A::V:T::P:::DE:VAL:::::GM::::VAAGAHGEA:S:::H
rrnAC1623       ::::L:::S:::::T:::::::::T:T::::::::::::DV:EF:
Hmu0935         ::::::::D:V:::::L:::IRK::V:::::::::::::::V:V: