3 genomes BUD2416 5 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2943 rrnAC2944 - Hbo1291 Hmu0238 Hmu0239 - - - -

Pairwise sequence scores
Consensus score	423	rrnAC2944	Hmu0238	Hbo1291	rrnAC2943	Hmu0239
345	rrnAC2944	746	423	282	269	288
334	Hmu0238	423	469	270	261	275
343	Hbo1291	282	270	428	314	313
347	rrnAC2943	269	261	314	435	356
344	Hmu0239	288	275	313	356	432

94 symbols
consensus       ---------------------------------MVHCPECETELATADDVEFVDMDATTG
#oth            111111111111111111111111111111111.1...1.11312321.1..213211..
rrnAC2944       MCRVSSRYRRQHADRKRCYPHKIFAGLGRCQEC:::::D:::S:E::::I:::EV:::::
Hmu0238         ::::::::::::::::::::::::::::::::::::::::Q:P:E::::I::AET:::::
Hbo1291         :::::::::::::::::::::::::::::::::::::::::::::GQG::::::LG:E::
rrnAC2943       :::::::::::::::::::::::::::::::::::::::::A:M:DP:::::L::ES:::
Hmu0239         ::::::::::::::::::::::::::::::::::A::::::AT:DQQ:::::::::S:::

consensus       FFKASKRFYLVACAACGAAIGSGVAGAK------
#oth            .11......212.32..21........2111112
rrnAC2944       :I:::::::TAN:::::VT:::::::::SNGGAA
Hmu0238         :I:::::::TAN:::::LT:::::::::SNGGAV
Hbo1291         :::::::::I:G:NE::::::::::::R::::::
rrnAC2943       ::T::::::::::DN::::::::::::M::::::
Hmu0239         ::T::::::::::GE::::::::::::M::::::