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3 genomes BUD2418 4 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC2881

-

Hbo3187

Hmu2713

Hmu2881

- - - -

Pairwise sequence scores
Consensus score2154 rrnAC2881 Hmu2881 Hbo3187 Hmu2713
1474rrnAC2881 2182 1298 802 593
1519Hmu2881 1298 2134 806 624
1256Hbo3187 802 806 2237 772
1067Hmu2713 593 624 772 2197

307 symbols
consensus       MNEPIESTRRELSVDG-DLAIHYLTAGDPAGPPIVLLHGGGLDAAAVSWREAIPALAADY
#oth            13321322233222..2113222121.1112.13111..111.1.31.1222111.1312
rrnAC2881       :TTG:S:E:VK:::::E:VD:::R:G:E--:::M:F:::I:::::T::::H:L::::PER
Hmu2881         :::S:::NITT:::::D:VTVR::::::--:::LLF:::I::::::::G:Y:L::::EE:
Hbo3187         :QI:HGA::::TAL:::-:RLSA:V:::::S::V::I::::::S:EL::C:L::::TD::
Hmu2713         --M::TE:---VTA:::-::::F:E:::::A:T:::::::II:::R:::G:V:EP::::C

consensus       TVYALDLPGHGRSDK-----------PRRTYTTDYYVDTLSAFLDALAIDAPALAGLSLG
#oth            2.1.2.11.1.3.2211111111111.312111111122123.111122232121.1.1.
rrnAC2881       :::::::::::D:::::::::::::::D::::::::LE:::E:::::::EE:::::::M:
Hmu2881         ::::::F::::E:E:::::::::::::::::::::::::::::V:E:GLAGASVV:V:M:
Hbo3187         R:::I::::Y:H::E::::::::::::E:VP::::::RV:ER::E:EE::::::V:V:::
Hmu2713         H:V:P::L:Y:::GVDSEGTDGRTVL:PGS:PVGRH::AMTG:::E::V:TFSI::::::

consensus       GAVALGHALDGGRPE-V-RLVLIDSYGLGADAPWRTLASLALRVPILNRLLWAAIGRSRA
#oth            .1.1..2..111211212211111.....2221212222232121323322133322113
rrnAC2881       ::::::::::::PV::-:::::V:::::::::Y:::A::SV:QT:::GNM::QGV:S:QS
Hmu2881         ::::::::::::::::-:::::V:::::::::Y:::G::::::I:FADS:::GSM:-T::
Hbo3187         :G::::Y::--:H::D:SAV:A:N:::::DSV:GGP:GA:FV:::Y:SE:S:R::A:::T
Hmu2713         :::G::L::--R::AL:DD:L::::::::RAL:NGR:SYGLA::QLF::IAI:LFR:::R

consensus       AARASLRAIVA--GNLPDALVDDVYEEVQRAT-GRALRRFQRAEFRASGLRTDYVDRLPE
#oth            23131113122122322332.12.1122213112213.21112.2332.2..2.212.21
rrnAC2881       :I:N:::SMGP:::EP:QQ::E::DSA:D:Q::V::M::W::S:::W::F::::S:::A:
Hmu2881         :V:T:::TMSG::AT:::E:::::::TISP:::M:T::SW::H::Q:D::::::TE::S:
Hbo3187         V:YFAV::::::Y::VRPHV::Q::::A::ND::S:W:T:::::IGFT::::N:::D::N
Hmu2713         LT::::GG:::DLDG:SE:A::A:::::::P:A:V:F:::RE::VTR::Y::V:::E:::

consensus       LDVPTLLIHGAADPLLPRSWSERAADLVPDGELRILENCGHWPPREHPDRFNRAVRAFL-
#oth            .21..212..33.211.31.121.23221112232223.1.1.1..2.311122112122
rrnAC2881       :::::M:::::V::::::R:::Q::GT:T:ST:K:F:::::C::::::::::::::::C:
Hmu2881         :::::::V::S::::::V:::Q::SE:L:::QFLAA:G:::::H::::E::::::T::::
Hbo3187         :SM:::F:::ED:K:V:S:::V::ES:::NS:V:::PE::::::::Q:Q:V:SL::L::Q
Hmu2713         :A:::R:L::RH:EVV:L::A:::::RI:::::VV:DS:A::::::A:STVVEHA:EIAV

consensus       -------
#oth            2111111
rrnAC2881       :::::::
Hmu2881         :::::::
Hbo3187         SNIPVDM
Hmu2713         R::::::