3 genomes BUD2426 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0510 - Hbo3953 Hmu1176 - - - -

Pairwise sequence scores
Consensus score	2262	Hmu1176	rrnAC0510	Hbo3953
1473	Hmu1176	2308	1057	1005
1746	rrnAC0510	1057	2325	1384
1692	Hbo3953	1005	1384	2428

323 symbols
consensus       ------------------------MRRSLTRRQLLQGAALASIAALAGCLGSGRSNQPAA
#oth            111111111111111111111111.2.121...2.11222.12212.1122.12122111
Hmu1176         :::::::::::::::::::::::::::::S:::::::VSF::VP:::AR::::::GS:::
rrnAC0510       :::::::::::::::::::::::::Q:PS::::F:T:TGV:AL:IT:::VS::S:SE:::
Hbo3953         VDINFQNLATVVVVVFQIRDEGIA:N::P::::Y::S::::::V:V:::ST:SNR::SIG

consensus       ------ATATETATTEASEDAPAESLDAWLADANGYDGRIRRFGPDSRPTVAVGQEIDG-
#oth            1111112121211112112211211.12..21......22.12.12111112..2221.1
Hmu1176         ::::::::P:P:TA:PS:T:::VDD::::::::::::::S:NV:Y:DLVE:L::HP:E:D
rrnAC0510       ETGTGTE:::::::PT:TPESTP::::D::D:::::::EP:::::E:::::W::::M:::
Hbo3953         ::::::NAISKP:::::::S::::::KE::SN::::::D:::Y::G::::I:::KLV:::

consensus       GLAFDPPAIEIAPMTTVRWDWTGHGGQHNVVALDGTFDSGRTNAQAGTMYHYHFEETGEY
#oth            11..1..11112.1.1.2.1.11..111.1.11..1....111112112.112..11.1.
Hmu1176         :Y::::::VTVT:G:::V:R:LD:::P:::::V::S::::EATDRPNET:SH:::T::V:
rrnAC0510       :::::::V:::P:::::::::::::::Q:I::::::::::::::::::::::F:::::::
Hbo3953         K:::S::::::::::I:T:::::::E:::::S:::::::::::::R::S:::I:::P:::

consensus       RYVSEPRRDDGMKGAIIVKEPPSSGNDTVDEWLVDASNFDGNIADRTDTDTATVTVGAEG
#oth            11....2..1.1..1.1.11..11.1211.2.1112111..211...111111..1.21.
Hmu1176         P::::::::::L::V:R:RK::E::YPDL:H::::VDGW::SL:::::S:AVS::::SP:
rrnAC0510       ::::::N::G:::::::::::::::::::::::AA::::::T:V:::::::::::A:V::
Hbo3953         :F::::H::::::::::::::::T::E:::K:V::S:::::::::::E:N::::::::::

consensus       NGGNFAFDPPALKISTGTTVAWEWTGEGGPHNIVFKGADIGNSDLVAEEGRHFENTFDEP
#oth            ...2...1.11111111...211.111.11.111111211221211212.211.2..1.1
Hmu1176         :::::::::L:VRC:::::::F::::D::A:D:A:Q:-:::T::IYS:S:::::V:::::
rrnAC0510       :::K:::G::::::::E:::R:::::::::::::S::DGPL::E::::::NTY:H::A:T
Hbo3953         :::H::::::V:::AA::::E:K:SD::T:::V:::N:::KSEK::DKP:V:::::::::

consensus       GTYLYACRPHEGLGMRGAVVVE-
#oth            .1...1.2..211.11.111..1
Hmu1176         :V::::::::::I:Q::GI:::E
rrnAC0510       :::::S:K::K::::::::::::
Hbo3953         :::::::E::GP:::K:::I:::