3 genomes BUD2429 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0569 - Hbo3109 Hmu1331 - - - -

Pairwise sequence scores
Consensus score	2450	Hbo3109	rrnAC0569	Hmu1331
2054	Hbo3109	2447	1778	1748
2059	rrnAC0569	1778	2408	1830
2125	Hmu1331	1748	1830	2537

345 symbols
consensus       -------ANALLLAPGFVDALAEFLTLGTLAEVIVNGLSKAALYVMIASGLTLIFGLMGV
#oth            11111112222122221111.11.11111122.211..1.1.1...1.1........1..
Hbo3109         :::::::M::::T::L:L:::GD::::E::SS:L::::::::::::L:::::::::::::
rrnAC0569       :::::::--------MI:E:::::::::E:GG::::::A:S:::::::::::::::::::
Hmu1331         MTLALEL:QQV::QV::::G::::VRP::F:::VLR::::::I:::::A::::::::L::

consensus       LNFAHGSLTMIGAYLGGLVMVVTVAQGTGPGTRLALFFVAIAVVFALLSALGGAIEVGLI
#oth            ......1...1.......1..11122111.21.121..1.21.1.11.11..121.121.
Hbo3109         ::::::::::::::::::::::LAGSAA:::::FLA::A:V::A::A:::::AVL:::::
rrnAC0569       ::::::::::V:::::::L:::::TG::A:L:::G::::::V::::::TM::::::TTI:
Hmu1331         ::::::A::::::::::::::L::::::::WA::::::::M::::G:::::::S:::S::

consensus       RPLYDRPPIYQILLTFGLTLVLEELARIVVGFYGLQPLSDWQAALATKPQFLRQQVALGP
#oth            .1......1........1..111.11...111.....111....11.1.11.22212..1
Hbo3109         :T::::::L:::::::::::M:D:::::::S::::::I::::::F:::::I:V:::D::I
rrnAC0569       :::::::::::::::::::::I::VV:::L:V:::::::::::::::::::::EP:::::
Hmu1331         :::::::::::::::::V::::::::::::::::::::AE:::::G:I:A::ETSQS:::

consensus       VSVRGLALFEILLGALTVVAIWAFLTRTRYGLYIRAGSEDAEMAEALGIDVRRVFTVVFA
#oth            1..2111..1.11.21..11..1...2.....1.......2..11...1...1...1...
Hbo3109         I::S::::::::F:V:::::::::::Q::::::::::::::::I::::V:::::::F:::
rrnAC0569       :::GWMS::Q::::TI:::G::::::K:::::::::::::T:::S:::::::Q:::::::
Hmu1331         :::::::::::F::::::A:::G:::::::::F:::::::S:::::::::::::::::::

consensus       LGAGIAGVAGTLLMWDPSWGASVPLAAETLLPAFVVVIVGGLGTFRGTVVAGLIVGLVDA
#oth            1.2.2..1..1..1...2..........1.....1...1...........1111..11..
Hbo3109         I:V:::::::V::A::::::::::::::::::::::::::::::::::::::T:::::::
rrnAC0569       ::I:L::A:::::::::T::::::::::::::::I::::::::::::::::A:V::MA::
Hmu1331         ::::V::::::::::::V::::::::::S:::::::::I:::::::::::G:::::::::

consensus       TTTWWFQN-VIEFTGLPELAIFLILVVALIVRPQGLFGVEEVGGH
#oth            11......11111.1..1121.11...2..11...11........
Hbo3109         :M:::::::A:A:::::Q:T:::::::V::LK:::::::::::::
rrnAC0569       V::::::::::::::::::VL::V:::T:::::::::::::::::
Hmu1331         ::::::::V:V:W:W:::V:::M::::::::::::IY::::::::