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3 genomes BUD2430 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC0566

-

Hbo3106

Hmu1334

- - - -

Pairwise sequence scores
Consensus score3557 Hbo3106 rrnAC0566 Hmu1334
2731Hbo3106 3609 2455 2338
3122rrnAC0566 2455 3543 2660
3033Hmu1334 2338 2660 3555

479 symbols
consensus       --MNRTATRRRVLRALGAAGVVGLAGCAG-DNGDGDQAADGDGGDT---EGNANGTSTGS
#oth            11122121..11122..1...1111..211.212212222111.2.11112222111111
Hbo3106         MSTDDRIS::S::ST::::::T:F:::::G:::GT::TTT:TD:E:MAG::D:T::T:::
rrnAC0566       :::QN::::::::G:::-::::::S::VS::DSSMTEQD:S:::T::::DSST::E:G::
Hmu1334         ::::::V::::AI:S:::::::A::::T:::G::::T::S::::::::::T:MQD:::TQ

consensus       --GSSDTVKIGVLQPRSGDLKYYGDQALWGFLSGLAYKGDTDPPTDIGSGETTISVGDVE
#oth            1111121121..1..211..1...2.2...11..11..1.1..1.1211.12.211.111
Hbo3106         AG:A:G:::L::I::M:T::::::M::::::F::M::::::::V:G:E:::Y:V:::G:D
rrnAC0566       ::::AQ::S:::::::A:::::::::S:::::::::::::::::::P::::V::TA::T:
Hmu1334         ::S:::SLT::::::L::::A:::Q:G:::L::::S::A:A:::::V:T:T::L::::::

consensus       YELIVRDTEFSADTAQTAATDLVQNEDVDMLAGCASSGAASRVITTVVKQANVPIMVGPA
#oth            .1.21...1.1..1..11..1..21.1....2..1..11....1.1.11112..2.1...
Hbo3106         :::Y::::K::::::::L::::::S::::::V:::::::::::::::A::::::Y:::::
rrnAC0566       :R:LI:::::::::::::::N::E:::::::::::::AV::::V::::N::Q::::L:::
Hmu1334         ::::::::::T::G::S::::::S::G::::F::S::::::::::N:::ASS::M:::::

consensus       ASADITSNSETCGDLVYRASENTAMDARSGGKYVARETDVSRVYLFGADYSFGRAVVNNY
#oth            ...1..11.1..1.111..1...........1...2....12..................
Hbo3106         ::::::G::K::::MIF::A:::::::::::::::Q::::QQ::::::::::::::::::
rrnAC0566       ::::::::::::S::::::::::::::::::::::::::::S::::::::::::::::::
Hmu1334         :::G:::E:::::::::::::::::::::::R:::T::::::::::::::::::::::::

consensus       RSVLEAEGVEIVGERFVNQGYSEWDGLLDNAEEAGAEGIVGGFTVATLPALFNAFLSGEY
#oth            11..111111...11..2...1..1...11.11...1.1......1...11.211.1.1.
Hbo3106         E:::K:NN:::::KK::Q::::::K::::K:S::::Q::::::::S::::::TTY:N:D:
rrnAC0566       :D:::::::D:::::::E:::A::::::::::::::::V:::::::::::M:::::::::
Hmu1334         :::::S::I:::::::::::::::::::E:::D::::::::::::::::N::S:::::::

consensus       SYRVFGGFATRITNSVVGQTMQRVLGDPLTEEKIRGAQLGPFTTRYHWNQYDNPINDAFV
#oth            1..1......1..11...1.1.2.1.2...11.121211..............1..1...
Hbo3106         N:::::::::E::T::::::L:K:F:K::::Q:LQ:K:F::::::::::::::D::S:::
rrnAC0566       ::::::::::::::::::G:::S:::E:::A::::DS:::::::::::::::::::::::
Hmu1334         :::A::::::::::A:::::::::::::::::::E::G::::::::::::::::::::::

consensus       ESYTNAYGVVPDLFTAGTFTGASAIHQAVQESGSTEGADIADALKGMTVTDTPKGENGYT
#oth            11.11...1......1.1..1....1...2.1...111..121.1....11....11..1
Hbo3106         DM:SK:::R::::::S:M::A::::V:::E:::::::::::SS:R::::AE::::TD::A
rrnAC0566       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu1334         :::::::::::::::::::::::::::::T:G:::DPD::TG::::::::::::::::::

consensus       FQEYNNQARSAMTVANPVPTTDEWADNWGAAIMPGDPLARISADETTIPADSDDMNCSL
#oth            ..1.....1.1....1.1.11.1.1.2.111.1.11.1...11111...2.112.2...
Hbo3106         ::K::::::::::::D:::I::::K:Q:::::::S::V:::D:S:::::S:AEE:G:::
rrnAC0566       ::::::::Q::::::::I:::::::::::::::::E:::::::::::::Q:::Q:D:::
Hmu1334         ::::::::::E:::::::::Q:Q:::S:DSL:Q:::::::::G:QV:::::::::::::